RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 HDLBPQ00341 1268 aaKnown RBP5.56□□□□□ -1.52
VPS35-203ENST00000562420 CDK5R2Q13319 367 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 ZNF746Q6NUN9 644 aaPredicted RBP5.56□□□□□ -1.52
VPS35-203ENST00000562420 C22orf34Q6ZV56 151 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 MCATQ8IVS2 390 aaKnown RBP5.56□□□□□ -1.52
VPS35-203ENST00000562420 ZNF654Q8IZM8 581 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 FBXL6Q8N531 539 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 SPON2Q9BUD6 331 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 FBRSQ9HAH7 460 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 PRDM10Q9NQV6 1147 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 PCMTD2Q9NV79 361 aa5.56□□□□□ -1.52
VPS35-203ENST00000562420 FAM170BA6NMN3 283 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 F6X3S4 739 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 FAM87AP0C7U9 286 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 COL9A2Q14055 689 aaPredicted RBP5.55□□□□□ -1.52
VPS35-203ENST00000562420 MSMPQ1L6U9 139 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 ZNF765Q7L2R6 523 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 UBE3DQ7Z6J8 389 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 SLFN12Q8IYM2 578 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 TMEM87BQ96K49 555 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 TGIF2Q9GZN2 237 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 EHMT1Q9H9B1 1298 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 MAPK8IP1Q9UQF2 711 aa5.55□□□□□ -1.52
VPS35-203ENST00000562420 POLR3KQ9Y2Y1 108 aaPredicted RBP5.55□□□□□ -1.52
VPS35-203ENST00000562420 PRNPP04156 253 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 TCF3P15923 654 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 SPINK2P20155 84 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 CRKP46108 304 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 YARSP54577 528 aaKnown RBP5.54□□□□□ -1.52
VPS35-203ENST00000562420 RACK1P63244 317 aaKnown RBP5.54□□□□□ -1.52
VPS35-203ENST00000562420 APOBRQ0VD83 1088 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 MLECQ14165 292 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 NKG7Q16617 165 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 ZNF394Q53GI3 561 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 FAM214BQ7L5A3 538 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 DTX1Q86Y01 620 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 NT5DC4Q86YG4 428 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 TOP6BLQ8N6T0 577 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 RASGRP4Q8TDF6 673 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 ACSF2Q96CM8 615 aaPredicted RBP5.54□□□□□ -1.52
VPS35-203ENST00000562420 TJP2Q9UDY2 1190 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 GTF2IRD1Q9UHL9 959 aa5.54□□□□□ -1.52
VPS35-203ENST00000562420 CYP26A1O43174 497 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 HTR3BO95264 441 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 PLCG1P19174 1290 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 GJA8P48165 433 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 ZNF165P49910 485 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 PRAMEF13Q5VWM6 474 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 SHISA5Q8N114 240 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 FBXO27Q8NI29 283 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 CYB5D2Q8WUJ1 264 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 EAF1Q96JC9 268 aaPredicted RBP5.53□□□□□ -1.52
VPS35-203ENST00000562420 IGSF5Q9NSI5 407 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 REV1Q9UBZ9 1251 aa5.53□□□□□ -1.52
VPS35-203ENST00000562420 MEIS3P2A8K0S8 358 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 SLITRK5O94991 958 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 EOMESO95936 686 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 IMPDH2P12268 514 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 YBX3P16989 372 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS35-203ENST00000562420 RAD51AP2Q09MP3 1159 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 LRRFIP1Q32MZ4 808 aaKnown RBP5.52□□□□□ -1.53
VPS35-203ENST00000562420 LETMD1Q6P1Q0 360 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 NKD1Q969G9 470 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 MISP3Q96FF7 219 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 BRMS1Q9HCU9 246 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 UBP1Q9NZI7 540 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 GMIPQ9P107 970 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.52□□□□□ -1.53
VPS35-203ENST00000562420 PCDHGB7Q9Y5F8 929 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 CORINQ9Y5Q5 1042 aa5.52□□□□□ -1.53
VPS35-203ENST00000562420 COL17A1Q9UMD9 1497 aaPredicted RBP5.51□□□□□ -1.53
VPS35-203ENST00000562420 E9PSI1 815 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 LEFTY1O75610 366 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 ZNF865P0CJ78 1059 aaPredicted RBP5.51□□□□□ -1.53
VPS35-203ENST00000562420 CYP7A1P22680 504 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 RBM25P49756 843 aaKnown RBP5.51□□□□□ -1.53
VPS35-203ENST00000562420 FAM13CQ8NE31 585 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 TNKS2Q9H2K2 1166 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 LGR6Q9HBX8 967 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 PRDM5Q9NQX1 630 aaPredicted RBP5.51□□□□□ -1.53
VPS35-203ENST00000562420 BSDC1Q9NW68 430 aaPredicted RBP5.51□□□□□ -1.53
VPS35-203ENST00000562420 ZNRF3Q9ULT6 936 aa5.51□□□□□ -1.53
VPS35-203ENST00000562420 TLR3O15455 904 aaKnown RBP5.5□□□□□ -1.53
VPS35-203ENST00000562420 PAX4O43316 350 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 CEACAM5P06731 702 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 CCNFP41002 786 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 ETV3P41162 512 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 KIR3DL1P43629 444 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 SOX9P48436 509 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 OXCT1P55809 520 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 SEZ6Q53EL9 994 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 CDCP2Q5VXM1 449 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 VSIG10LQ86VR7 867 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 STK11IPQ8N1F8 1099 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 DNAJB8Q8NHS0 232 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 NETO1Q8TDF5 533 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 ZNF428Q96B54 188 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 GPRASP2Q96D09 838 aa5.5□□□□□ -1.53
VPS35-203ENST00000562420 HEXIM2Q96MH2 286 aaKnown RBP5.5□□□□□ -1.53
VPS35-203ENST00000562420 MIPEPQ99797 713 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms