RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ASCC2Q9H1I8 757 aaPredicted RBP23.24■■□□□ 1.31
VPS35-202ENST00000561713 GJD2Q9UKL4 321 aa23.24■■□□□ 1.31
VPS35-202ENST00000561713 HMGCRP04035 888 aa23.23■■□□□ 1.31
VPS35-202ENST00000561713 TRIM32Q13049 653 aa23.23■■□□□ 1.31
VPS35-202ENST00000561713 LRCH3Q96II8 777 aa23.23■■□□□ 1.31
VPS35-202ENST00000561713 ALPK3Q96L96 1907 aa23.23■■□□□ 1.31
VPS35-202ENST00000561713 USP17L5A8MUK1 530 aa23.22■■□□□ 1.31
VPS35-202ENST00000561713 MAP4K4O95819 1239 aaPredicted RBP23.22■■□□□ 1.31
VPS35-202ENST00000561713 PABPC4Q13310 644 aaKnown RBP eCLIP23.22■■□□□ 1.31
VPS35-202ENST00000561713 TBC1D2Q9BYX2 928 aa23.22■■□□□ 1.31
VPS35-202ENST00000561713 FLT1P17948 1338 aa23.22■■□□□ 1.31
VPS35-202ENST00000561713 DYNLL1P63167 89 aaKnown RBP23.21■■□□□ 1.31
VPS35-202ENST00000561713 SHROOM1Q2M3G4 852 aaPredicted RBP23.21■■□□□ 1.31
VPS35-202ENST00000561713 SH3D19Q5HYK7 790 aa23.21■■□□□ 1.31
VPS35-202ENST00000561713 AACSQ86V21 672 aa23.21■■□□□ 1.31
VPS35-202ENST00000561713 TGFBRAP1Q8WUH2 860 aa23.21■■□□□ 1.31
VPS35-202ENST00000561713 BCL11AQ9H165 835 aa23.21■■□□□ 1.31
VPS35-202ENST00000561713 IL1RAPL2Q9NP60 686 aa23.21■■□□□ 1.31
VPS35-202ENST00000561713 RPTORQ8N122 1335 aa23.2■■□□□ 1.3
VPS35-202ENST00000561713 APBB1O00213 710 aa23.2■■□□□ 1.3
VPS35-202ENST00000561713 IDH1O75874 414 aaKnown RBP23.2■■□□□ 1.3
VPS35-202ENST00000561713 C7orf61Q8IZ16 206 aa23.2■■□□□ 1.3
VPS35-202ENST00000561713 DNAJC18Q9H819 358 aa23.2■■□□□ 1.3
VPS35-202ENST00000561713 SAP30BPQ9UHR5 308 aaKnown RBP23.2■■□□□ 1.3
VPS35-202ENST00000561713 HERC5Q9UII4 1024 aaKnown RBP23.2■■□□□ 1.3
VPS35-202ENST00000561713 PEX10O60683 326 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 JAG1P78504 1218 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 ANKLE1Q8NAG6 615 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 MIGA1Q8NAN2 632 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 ZNF512BQ96KM6 892 aaPredicted RBP23.19■■□□□ 1.3
VPS35-202ENST00000561713 ANTXR1Q9H6X2 564 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 AS3MTQ9HBK9 375 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 HMX1Q9NP08 348 aaPredicted RBP23.19■■□□□ 1.3
VPS35-202ENST00000561713 COG6Q9Y2V7 657 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 MYH7P12883 1935 aa23.19■■□□□ 1.3
VPS35-202ENST00000561713 BAG3O95817 575 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 CYP7A1P22680 504 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 MNX1P50219 401 aaPredicted RBP23.18■■□□□ 1.3
VPS35-202ENST00000561713 MTMR2Q13614 643 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 SLC17A8Q8NDX2 589 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 TRIB2Q92519 343 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 GDF15Q99988 308 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 PI4KBQ9UBF8 816 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 MORF4L1Q9UBU8 362 aa23.18■■□□□ 1.3
VPS35-202ENST00000561713 ZMYND8Q9ULU4 1186 aaPredicted RBP23.18■■□□□ 1.3
VPS35-202ENST00000561713 PLXNB2O15031 1838 aa23.17■■□□□ 1.3
VPS35-202ENST00000561713 P2RX7Q99572 595 aaKnown RBP23.17■■□□□ 1.3
VPS35-202ENST00000561713 WDR18Q9BV38 432 aa23.17■■□□□ 1.3
VPS35-202ENST00000561713 NBPF3Q9H094 633 aa23.17■■□□□ 1.3
VPS35-202ENST00000561713 PALD1Q9ULE6 856 aa23.17■■□□□ 1.3
VPS35-202ENST00000561713 MYH8P13535 1937 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 GDF11O95390 407 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 PLCG2P16885 1265 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 CYP2B6P20813 491 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 BACE1P56817 501 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 PPP4CP60510 307 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 IRX3P78415 501 aaPredicted RBP23.16■■□□□ 1.3
VPS35-202ENST00000561713 MAGEB6Q8N7X4 407 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 TXNRD2Q9NNW7 524 aa23.16■■□□□ 1.3
VPS35-202ENST00000561713 BMP8BP34820 402 aa23.15■■□□□ 1.3
VPS35-202ENST00000561713 ERC1Q8IUD2 1116 aa23.15■■□□□ 1.3
VPS35-202ENST00000561713 DHX36Q9H2U1 1008 aaKnown RBP23.15■■□□□ 1.3
VPS35-202ENST00000561713 ASNSP08243 561 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 SYN1P17600 705 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 HOXA7P31268 230 aaPredicted RBP23.14■■□□□ 1.29
VPS35-202ENST00000561713 CRACR2BQ8N4Y2 399 aaPredicted RBP23.14■■□□□ 1.29
VPS35-202ENST00000561713 RHPN1Q8TCX5 695 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 C11orf49Q9H6J7 331 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 TMOD4Q9NZQ9 345 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 OGDHLQ9ULD0 1010 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 DNAH12Q6ZR08 3092 aa23.14■■□□□ 1.29
VPS35-202ENST00000561713 BAZ2AQ9UIF9 1905 aaKnown RBP23.14■■□□□ 1.29
VPS35-202ENST00000561713 DLL1O00548 723 aa23.13■■□□□ 1.29
VPS35-202ENST00000561713 PRKAR2AP13861 404 aaKnown RBP23.13■■□□□ 1.29
VPS35-202ENST00000561713 HERVK_113P62684 666 aa23.13■■□□□ 1.29
VPS35-202ENST00000561713 MAP3K21Q5TCX8 1036 aa23.13■■□□□ 1.29
VPS35-202ENST00000561713 SIRT2Q8IXJ6 389 aa23.13■■□□□ 1.29
VPS35-202ENST00000561713 GPRC5AQ8NFJ5 357 aa23.13■■□□□ 1.29
VPS35-202ENST00000561713 METTL16Q86W50 562 aaKnown RBP23.12■■□□□ 1.29
VPS35-202ENST00000561713 NUDT12Q9BQG2 462 aa23.12■■□□□ 1.29
VPS35-202ENST00000561713 TRIM34Q9BYJ4 488 aa23.12■■□□□ 1.29
VPS35-202ENST00000561713 RBPJLQ9UBG7 517 aa23.12■■□□□ 1.29
VPS35-202ENST00000561713 C19orf81C9J6K1 198 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 USP17L10C9JJH3 530 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 Q3C1V9 767 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 C20orf194Q5TEA3 1177 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 FOXP4Q8IVH2 680 aaPredicted RBP23.11■■□□□ 1.29
VPS35-202ENST00000561713 RCAN3Q9UKA8 241 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 DDX19BQ9UMR2 479 aa23.11■■□□□ 1.29
VPS35-202ENST00000561713 LAMA2P24043 3122 aaKnown RBP23.11■■□□□ 1.29
VPS35-202ENST00000561713 XRCC5P13010 732 aaKnown RBP23.1■■□□□ 1.29
VPS35-202ENST00000561713 MAGEA10P43363 369 aaPredicted RBP23.1■■□□□ 1.29
VPS35-202ENST00000561713 POTEEQ6S8J3 1075 aa23.1■■□□□ 1.29
VPS35-202ENST00000561713 DNAJC2Q99543 621 aaKnown RBP23.1■■□□□ 1.29
VPS35-202ENST00000561713 ZBTB40Q9NUA8 1239 aa23.1■■□□□ 1.29
VPS35-202ENST00000561713 ZBTB21Q9ULJ3 1066 aa23.1■■□□□ 1.29
VPS35-202ENST00000561713 PFASO15067 1338 aa23.09■■□□□ 1.29
VPS35-202ENST00000561713 HLA-DOAP06340 250 aa23.09■■□□□ 1.29
VPS35-202ENST00000561713 MS4A1P11836 297 aa23.09■■□□□ 1.29
VPS35-202ENST00000561713 USP5P45974 858 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms