RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 FHDC1Q9C0D6 1143 aaPredicted RBP24.87■■□□□ 1.57
CLN3-209ENST00000561689 ZNF287Q9HBT7 754 aa24.87■■□□□ 1.57
CLN3-209ENST00000561689 DDX60LQ5H9U9 1706 aaKnown RBP24.86■■□□□ 1.57
CLN3-209ENST00000561689 F13A1P00488 732 aa24.86■■□□□ 1.57
CLN3-209ENST00000561689 TSPY3P0CV98 308 aa24.86■■□□□ 1.57
CLN3-209ENST00000561689 TSPY8P0CW00 308 aa24.86■■□□□ 1.57
CLN3-209ENST00000561689 OGFOD1Q8N543 542 aa24.86■■□□□ 1.57
CLN3-209ENST00000561689 FER1L6Q2WGJ9 1857 aa24.86■■□□□ 1.57
CLN3-209ENST00000561689 DDX11L8A8MPP1 907 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 PRELPP51888 382 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 CIAPIN1Q6FI81 312 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 IL17RBQ9NRM6 502 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 FAM198AQ9UFP1 575 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 HDAC9Q9UKV0 1011 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 LTBP3Q9NS15 1303 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 IDI2Q9BXS1 227 aa24.85■■□□□ 1.57
CLN3-209ENST00000561689 RTN1Q16799 776 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 AGBL3Q8NEM8 1001 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 ORC3Q9UBD5 711 aaPredicted RBP24.84■■□□□ 1.57
CLN3-209ENST00000561689 PDIA4P13667 645 aaKnown RBP24.84■■□□□ 1.57
CLN3-209ENST00000561689 CATIPQ7Z7H3 387 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 FERMT3Q86UX7 667 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 FANCBQ8NB91 859 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 PHKBQ93100 1093 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 KIF3AQ9Y496 699 aa24.84■■□□□ 1.57
CLN3-209ENST00000561689 SPDYE2BA6NHP3 402 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 H3BQV1 296 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 SPDYE6P0CI01 402 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 NT5C2P49902 561 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 GABPAQ06546 454 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 IFFO2Q5TF58 517 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 RCSD1Q6JBY9 416 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 CPLX2Q6PUV4 134 aaKnown RBP24.83■■□□□ 1.57
CLN3-209ENST00000561689 SERPINB13Q9UIV8 391 aa24.83■■□□□ 1.57
CLN3-209ENST00000561689 FOCADQ5VW36 1801 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 GOLGA6L22H0YM25 854 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 CDKL5O76039 1030 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 DLGAP5Q15398 846 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 NTRK3Q16288 839 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 PSME4Q14997 1843 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 MYH1P12882 1939 aa24.82■■□□□ 1.56
CLN3-209ENST00000561689 NID2Q14112 1375 aa24.81■■□□□ 1.56
CLN3-209ENST00000561689 DDTLA6NHG4 134 aaPredicted RBP24.81■■□□□ 1.56
CLN3-209ENST00000561689 HLA-DOAP06340 250 aa24.81■■□□□ 1.56
CLN3-209ENST00000561689 SLURP2P0DP57 97 aa24.81■■□□□ 1.56
CLN3-209ENST00000561689 RCAN1P53805 252 aa24.81■■□□□ 1.56
CLN3-209ENST00000561689 TNIP1Q15025 636 aa24.81■■□□□ 1.56
CLN3-209ENST00000561689 ZSCAN29Q8IWY8 852 aaPredicted RBP24.81■■□□□ 1.56
CLN3-209ENST00000561689 CMTR1Q8N1G2 835 aaKnown RBP24.81■■□□□ 1.56
CLN3-209ENST00000561689 TROAPQ12815 778 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 SH3BP5LQ7L8J4 393 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 DGKHQ86XP1 1220 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 CCDC82Q8N4S0 544 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 CLRN2A0PK11 232 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 GUCY1B3Q02153 619 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 TCP11L1Q9NUJ3 509 aa24.8■■□□□ 1.56
CLN3-209ENST00000561689 SHTN1A0MZ66 631 aa24.79■■□□□ 1.56
CLN3-209ENST00000561689 ARHGAP27Q6ZUM4 889 aa24.79■■□□□ 1.56
CLN3-209ENST00000561689 NEDD1Q8NHV4 660 aa24.79■■□□□ 1.56
CLN3-209ENST00000561689 DHX36Q9H2U1 1008 aaKnown RBP24.79■■□□□ 1.56
CLN3-209ENST00000561689 ATP6V1DQ9Y5K8 247 aa24.79■■□□□ 1.56
CLN3-209ENST00000561689 CCDC196A0A1B0GTZ2 297 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 NPM3O75607 178 aaKnown RBP24.78■■□□□ 1.56
CLN3-209ENST00000561689 SLC26A6Q9BXS9 759 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 KAT14Q9H8E8 782 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 TAOK2Q9UL54 1235 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 STX8Q9UNK0 236 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 DDAH1O94760 285 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 IFNAR1P17181 557 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 OTUD7BQ6GQQ9 843 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 AIFM3Q96NN9 605 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 SWAP70Q9UH65 585 aa24.78■■□□□ 1.56
CLN3-209ENST00000561689 TCP10L2B9ZVM9 353 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 UBE2Q2LH0YL09 131 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 FZD9O00144 591 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 PRPF40AO75400 957 aaKnown RBP24.77■■□□□ 1.56
CLN3-209ENST00000561689 CALM1P0DP23 149 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 CALM2P0DP24 149 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 CALM3P0DP25 149 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 SHMT1P34896 483 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 CCDC178Q5BJE1 867 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 ANKS1AQ92625 1134 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 GJB4Q9NTQ9 266 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 TMOD2Q9NZR1 351 aa24.77■■□□□ 1.56
CLN3-209ENST00000561689 ZNF70Q9UC06 446 aaPredicted RBP24.77■■□□□ 1.56
CLN3-209ENST00000561689 FAM196BA6NMK8 535 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 AKR1B1P15121 316 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 SSRP1Q08945 709 aaKnown RBP24.76■■□□□ 1.55
CLN3-209ENST00000561689 FAM173BQ6P4H8 233 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 CRACR2BQ8N4Y2 399 aaPredicted RBP24.76■■□□□ 1.55
CLN3-209ENST00000561689 C8orf76Q96K31 380 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 EHD4Q9H223 541 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 GDPD2Q9HCC8 539 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 PI4KBQ9UBF8 816 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 GJA3Q9Y6H8 435 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 ECM29Q5VYK3 1845 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 TRAK2O60296 914 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 ENTPD3O75355 529 aa24.76■■□□□ 1.55
CLN3-209ENST00000561689 EIF6P56537 245 aaKnown RBP24.76■■□□□ 1.55
CLN3-209ENST00000561689 DNM1Q05193 864 aaKnown RBP24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms