RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.92□□□□□ -0.34
CUX1-218ENST00000560541 FHOD1Q9Y613 1164 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 UBR2Q8IWV8 1755 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 hCG_1642624A0A1W2PR95 340 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 ST5P78524 1137 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 BAG1Q99933 345 aaPredicted RBP12.92□□□□□ -0.34
CUX1-218ENST00000560541 SAMSN1Q9NSI8 373 aaKnown RBP12.92□□□□□ -0.34
CUX1-218ENST00000560541 PARP3Q9Y6F1 533 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 PHLPP2Q6ZVD8 1323 aa12.92□□□□□ -0.34
CUX1-218ENST00000560541 STARD3NLO95772 234 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 CASP1P29466 404 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 RASGRF1Q13972 1273 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 KARSQ15046 597 aaKnown RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 SAFBQ15424 915 aaKnown RBP eCLIP12.91□□□□□ -0.34
CUX1-218ENST00000560541 SGMS1Q86VZ5 419 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 FAM53CQ9NYF3 392 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 SH3BP1Q9Y3L3 701 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 ABCC12Q96J65 1359 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 ANKRD65E5RJM6 399 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 SMIM22K7EJ46 135 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 CCP110O43303 1012 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 FMNL1O95466 1100 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 MMP1P03956 469 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 PNMA6AP0CW24 399 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 MDM2Q00987 491 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 BMS1Q14692 1282 aaKnown RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 KLHL10Q6JEL2 608 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 MFSD6Q6ZSS7 791 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 SPATA5Q8NB90 893 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 PLCD4Q9BRC7 762 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 IQSEC3Q9UPP2 1182 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 ZBTB1Q9Y2K1 713 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 FAM237AA0A1B0GTK4 181 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 FAM205CA6NFA0 338 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 MTF1Q14872 753 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 PPP2R5AQ15172 486 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 RTN1Q16799 776 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 TTC31Q49AM3 519 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 LCORLQ8N3X6 602 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 DONSONQ9NYP3 566 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 FBXO2Q9UK22 296 aaPredicted RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
CUX1-218ENST00000560541 DDX60Q8IY21 1712 aaKnown RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 PARP4Q9UKK3 1724 aaKnown RBP12.91□□□□□ -0.34
CUX1-218ENST00000560541 ARHGAP6O43182 974 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 STX17P56962 302 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 ZSCAN26Q16670 478 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 AKNAD1Q5T1N1 836 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 PACS2Q86VP3 889 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 TRIM22Q8IYM9 498 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 GOLGA6L1Q8N7Z2 621 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 SMARCE1Q969G3 411 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 MED15Q96RN5 788 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 IRX2Q9BZI1 471 aaPredicted RBP12.9□□□□□ -0.34
CUX1-218ENST00000560541 BRMS1Q9HCU9 246 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 CABP5Q9NP86 173 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 COL5A2P05997 1499 aaPredicted RBP12.9□□□□□ -0.34
CUX1-218ENST00000560541 GSG1L2A8MUP6 293 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 ZSCAN12O43309 604 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 TADA3O75528 432 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 DHX8Q14562 1220 aaKnown RBP12.9□□□□□ -0.34
CUX1-218ENST00000560541 TEX35Q5T0J7 233 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 TMCO3Q6UWJ1 677 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 BRINP3Q76B58 766 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 TC2NQ8N9U0 490 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 CPLX3Q8WVH0 158 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 CALR3Q96L12 384 aaKnown RBP12.9□□□□□ -0.34
CUX1-218ENST00000560541 ZSWIM4Q9H7M6 989 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 SLC4A4Q9Y6R1 1079 aa12.9□□□□□ -0.34
CUX1-218ENST00000560541 ATRNO75882 1429 aa12.9□□□□□ -0.35
CUX1-218ENST00000560541 A0A0G2JS52 829 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 COBLO75128 1261 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 IFNAR1P17181 557 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 ARID4AP29374 1257 aaPredicted RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 LIFRP42702 1097 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 AFMP43652 599 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 WTAPQ15007 396 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 PUM3Q15397 648 aaKnown RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 ZCCHC17Q9NP64 241 aaKnown RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 PTPREP23469 700 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 MAP3K12Q12852 859 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 SPECC1LQ69YQ0 1117 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 CSRNP2Q9H175 543 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 RRP15Q9Y3B9 282 aaKnown RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 ECM29Q5VYK3 1845 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 PLA2G4AP47712 749 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 BIRC2Q13490 618 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 SMYD4Q8IYR2 804 aaPredicted RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 LPIN2Q92539 896 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 DHX58Q96C10 678 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 SLC4A9Q96Q91 983 aa12.89□□□□□ -0.35
CUX1-218ENST00000560541 HOOK1Q9UJC3 728 aaKnown RBP12.89□□□□□ -0.35
CUX1-218ENST00000560541 CDHR2Q9BYE9 1310 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 A0A0U1RQJ8 604 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 MINDY4BA8MYZ0 360 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 UQCRFS1P1P0C7P4 283 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 BCAMP50895 628 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 MAP2K1Q02750 393 aaPredicted RBP12.88□□□□□ -0.35
CUX1-218ENST00000560541 ATRIPQ8WXE1 791 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 153.1 ms