RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 THSD7BQ9C0I4 1608 aa25.92■■□□□ 1.74
SNX1-210ENST00000560260 GREB1LQ9C091 1923 aaPredicted RBP25.91■■□□□ 1.74
SNX1-210ENST00000560260 PRDM1O75626 825 aa25.91■■□□□ 1.74
SNX1-210ENST00000560260 PAXIP1Q6ZW49 1069 aaPredicted RBP25.91■■□□□ 1.74
SNX1-210ENST00000560260 WNK4Q96J92 1243 aa25.91■■□□□ 1.74
SNX1-210ENST00000560260 ZBTB21Q9ULJ3 1066 aa25.91■■□□□ 1.74
SNX1-210ENST00000560260 RBM8AQ9Y5S9 174 aaKnown RBP25.91■■□□□ 1.74
SNX1-210ENST00000560260 SPDYE5A6NIY4 337 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 AKR1B1P15121 316 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 RASA1P20936 1047 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 CERKLQ49MI3 558 aaPredicted RBP25.9■■□□□ 1.74
SNX1-210ENST00000560260 NKX2-3Q8TAU0 364 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 SLC10A4Q96EP9 437 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 CAPNS2Q96L46 248 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 TAOK2Q9UL54 1235 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 TAF6LQ9Y6J9 622 aa25.9■■□□□ 1.74
SNX1-210ENST00000560260 U3KPZ7 1027 aaPredicted RBP25.9■■□□□ 1.74
SNX1-210ENST00000560260 GUCY1A2P33402 732 aa25.89■■□□□ 1.74
SNX1-210ENST00000560260 VEGFBP49765 207 aa25.89■■□□□ 1.74
SNX1-210ENST00000560260 MKRN3Q13064 507 aaKnown RBP25.89■■□□□ 1.74
SNX1-210ENST00000560260 KIAA1211Q6ZU35 1233 aa25.89■■□□□ 1.74
SNX1-210ENST00000560260 OPTNQ96CV9 577 aa25.89■■□□□ 1.74
SNX1-210ENST00000560260 GH2P01242 217 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 PTPRAP18433 802 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 GRM1Q13255 1194 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 SPRYD7Q5W111 196 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 OTUD5Q96G74 571 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 ZIC5Q96T25 663 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 CTNNA3Q9UI47 895 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 CYP21A2P08686 494 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 FGRP09769 529 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 ABCB5Q2M3G0 1257 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 ERO1BQ86YB8 467 aa25.88■■□□□ 1.73
SNX1-210ENST00000560260 NEDD4P46934 1319 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 ZNF213O14771 459 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 AOC2O75106 756 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 IMMTQ16891 758 aaKnown RBP25.87■■□□□ 1.73
SNX1-210ENST00000560260 DNAJC5GQ8N7S2 189 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 STAG1Q8WVM7 1258 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.87■■□□□ 1.73
SNX1-210ENST00000560260 MKNK2Q9HBH9 465 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 PICK1Q9NRD5 415 aa25.87■■□□□ 1.73
SNX1-210ENST00000560260 SLC3A2P08195 630 aaKnown RBP25.86■■□□□ 1.73
SNX1-210ENST00000560260 ASNSP08243 561 aa25.86■■□□□ 1.73
SNX1-210ENST00000560260 C8orf34Q49A92 452 aa25.86■■□□□ 1.73
SNX1-210ENST00000560260 CLEC10AQ8IUN9 316 aa25.86■■□□□ 1.73
SNX1-210ENST00000560260 CCDC102AQ96A19 550 aa25.86■■□□□ 1.73
SNX1-210ENST00000560260 WDR33Q9C0J8 1336 aaKnown RBP25.85■■□□□ 1.73
SNX1-210ENST00000560260 ORC4O43929 436 aa25.85■■□□□ 1.73
SNX1-210ENST00000560260 PDE4BQ07343 736 aa25.85■■□□□ 1.73
SNX1-210ENST00000560260 PPIL2Q13356 520 aa25.85■■□□□ 1.73
SNX1-210ENST00000560260 SEPT2Q15019 361 aa25.85■■□□□ 1.73
SNX1-210ENST00000560260 AKNAD1Q5T1N1 836 aa25.85■■□□□ 1.73
SNX1-210ENST00000560260 PTPRFP10586 1907 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 MPHOSPH10O00566 681 aaKnown RBP25.84■■□□□ 1.73
SNX1-210ENST00000560260 IRF6O14896 467 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 PPATQ06203 517 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 NECTIN1Q15223 517 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 FAM47AQ5JRC9 791 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 STOX1Q6ZVD7 989 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 CCDC17Q96LX7 622 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 GINM1Q9NU53 330 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 ZHX2Q9Y6X8 837 aa25.84■■□□□ 1.73
SNX1-210ENST00000560260 PLIN4Q96Q06 1357 aa25.83■■□□□ 1.73
SNX1-210ENST00000560260 SLC27A2O14975 620 aa25.83■■□□□ 1.73
SNX1-210ENST00000560260 ZBTB48P10074 688 aaPredicted RBP25.83■■□□□ 1.73
SNX1-210ENST00000560260 ECE1P42892 770 aa25.83■■□□□ 1.73
SNX1-210ENST00000560260 TMEM179Q6ZVK1 233 aa25.83■■□□□ 1.73
SNX1-210ENST00000560260 AFG3L2Q9Y4W6 797 aa25.83■■□□□ 1.73
SNX1-210ENST00000560260 USP17L5A8MUK1 530 aa25.82■■□□□ 1.72
SNX1-210ENST00000560260 RAB3GAP1Q15042 981 aa25.82■■□□□ 1.72
SNX1-210ENST00000560260 RRP12Q5JTH9 1297 aaKnown RBP25.82■■□□□ 1.72
SNX1-210ENST00000560260 CREB3L3Q68CJ9 461 aa25.82■■□□□ 1.72
SNX1-210ENST00000560260 CABP5Q9NP86 173 aa25.82■■□□□ 1.72
SNX1-210ENST00000560260 KCNH4Q9UQ05 1017 aa25.82■■□□□ 1.72
SNX1-210ENST00000560260 IGKV6D-41A0A0C4DH26 115 aa25.81■■□□□ 1.72
SNX1-210ENST00000560260 MFSD6Q6ZSS7 791 aa25.81■■□□□ 1.72
SNX1-210ENST00000560260 ZNF444Q8N0Y2 327 aaPredicted RBP25.81■■□□□ 1.72
SNX1-210ENST00000560260 MS4A4AQ96JQ5 239 aa25.81■■□□□ 1.72
SNX1-210ENST00000560260 ZNF287Q9HBT7 754 aa25.81■■□□□ 1.72
SNX1-210ENST00000560260 TOMM22Q9NS69 142 aa25.81■■□□□ 1.72
SNX1-210ENST00000560260 REC8O95072 547 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 SEC24BO95487 1268 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 TFAP4Q01664 338 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 KIF23Q02241 960 aaPredicted RBP25.8■■□□□ 1.72
SNX1-210ENST00000560260 NOGQ13253 232 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 SIAH1Q8IUQ4 282 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 ACER1Q8TDN7 264 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 WDR18Q9BV38 432 aa25.8■■□□□ 1.72
SNX1-210ENST00000560260 RNF41Q9H4P4 317 aaPredicted RBP25.8■■□□□ 1.72
SNX1-210ENST00000560260 TRIM75PA6NK02 468 aa25.79■■□□□ 1.72
SNX1-210ENST00000560260 RANBP6O60518 1105 aaKnown RBP25.79■■□□□ 1.72
SNX1-210ENST00000560260 PCP11498 1178 aaKnown RBP25.79■■□□□ 1.72
SNX1-210ENST00000560260 DGKZQ13574 1117 aa25.79■■□□□ 1.72
SNX1-210ENST00000560260 NEDD1Q8NHV4 660 aa25.79■■□□□ 1.72
SNX1-210ENST00000560260 LOC285556D6RIA3 1793 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 B4E1Z4 1266 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 E7EWF7 191 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 SPP2Q13103 211 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 MOGSQ13724 837 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms