RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ATRNL1Q5VV63 1379 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 TNKSO95271 1327 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 SEC23AQ15436 765 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 TBC1D10BQ4KMP7 808 aaPredicted RBP13.17□□□□□ -0.3
USP3-218ENST00000560202 NFXL1Q6ZNB6 911 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 TMTC2Q8N394 836 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 FAM151AQ8WW52 585 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 GPRC5DQ9NZD1 345 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 UTRNP46939 3433 aa13.17□□□□□ -0.3
USP3-218ENST00000560202 COL2A1P02458 1487 aaPredicted RBP13.17□□□□□ -0.3
USP3-218ENST00000560202 DICER1Q9UPY3 1922 aaKnown RBP13.16□□□□□ -0.3
USP3-218ENST00000560202 SBF1O95248 1867 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 CCDC69A6NI79 296 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 GOLGA8BA8MQT2 603 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 DDNO94850 711 aaPredicted RBP13.16□□□□□ -0.3
USP3-218ENST00000560202 SCRN1Q12765 414 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 KIF4BQ2VIQ3 1234 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 FAM83AQ86UY5 434 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 FOXP4Q8IVH2 680 aaPredicted RBP13.16□□□□□ -0.3
USP3-218ENST00000560202 ENAHQ8N8S7 591 aaPredicted RBP13.16□□□□□ -0.3
USP3-218ENST00000560202 TAOK2Q9UL54 1235 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 MYH1P12882 1939 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
USP3-218ENST00000560202 NMT2O60551 498 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 CCT2P78371 535 aaKnown RBP13.15□□□□□ -0.3
USP3-218ENST00000560202 APOA5Q6Q788 366 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 CRACR2BQ8N4Y2 399 aaPredicted RBP13.15□□□□□ -0.3
USP3-218ENST00000560202 TCP11L1Q9NUJ3 509 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 CHMP5Q9NZZ3 219 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 HPS5Q9UPZ3 1129 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 SMC3Q9UQE7 1217 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 SLC12A7Q9Y666 1083 aa13.15□□□□□ -0.3
USP3-218ENST00000560202 ZBTB43O43298 467 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 SHMT1P34896 483 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 CCDC178Q5BJE1 867 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 IFIT1BQ5T764 474 aaKnown RBP13.15□□□□□ -0.31
USP3-218ENST00000560202 SYNE3Q6ZMZ3 975 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 METTL16Q86W50 562 aaKnown RBP13.15□□□□□ -0.31
USP3-218ENST00000560202 RAB11FIP4Q86YS3 637 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 NEDD1Q8NHV4 660 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 CHMP4CQ96CF2 233 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 CSRNP1Q96S65 589 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 IL17RBQ9NRM6 502 aa13.15□□□□□ -0.31
USP3-218ENST00000560202 CIZ1Q9ULV3 898 aaPredicted RBP13.15□□□□□ -0.31
USP3-218ENST00000560202 SLURP2P0DP57 97 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 EPS15P42566 896 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 TNNI2P48788 182 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 DGKHQ86XP1 1220 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 TRIM34Q9BYJ4 488 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 DNAJC18Q9H819 358 aa13.14□□□□□ -0.31
USP3-218ENST00000560202 NCOA5Q9HCD5 579 aaKnown RBP13.14□□□□□ -0.31
USP3-218ENST00000560202 ASTN2O75129 1339 aaPredicted RBP13.13□□□□□ -0.31
USP3-218ENST00000560202 LMOD1P29536 600 aaPredicted RBP13.13□□□□□ -0.31
USP3-218ENST00000560202 METAP2P50579 478 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP3-218ENST00000560202 TNFAIP1Q13829 316 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 GSE1Q14687 1217 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 RCSD1Q6JBY9 416 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 DPY19L2Q6NUT2 758 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 MICU3Q86XE3 530 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 ZNF654Q8IZM8 581 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 TRPM4Q8TD43 1214 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 ANKS1AQ92625 1134 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 LLPHQ9BRT6 129 aaKnown RBP13.13□□□□□ -0.31
USP3-218ENST00000560202 MYL10Q9BUA6 226 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 TMEM39BQ9GZU3 492 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 HACL1Q9UJ83 578 aa13.13□□□□□ -0.31
USP3-218ENST00000560202 ZC3H4Q9UPT8 1303 aaKnown RBP13.13□□□□□ -0.31
USP3-218ENST00000560202 FAM196BA6NMK8 535 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 DHX16O60231 1041 aaKnown RBP13.12□□□□□ -0.31
USP3-218ENST00000560202 DTNBO60941 627 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 AKR1B1P15121 316 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 RXRAP19793 462 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 GJB2P29033 226 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 RCAN1P53805 252 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 RASA3Q14644 834 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 TATDN1Q6P1N9 297 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 CCDC17Q96LX7 622 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP3-218ENST00000560202 HERC5Q9UII4 1024 aaKnown RBP13.12□□□□□ -0.31
USP3-218ENST00000560202 GOLGA8AA7E2F4 631 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 JAK2O60674 1132 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 CTDNEP1O95476 244 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 CATIPQ7Z7H3 387 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 NSUN7Q8NE18 718 aaKnown RBP13.12□□□□□ -0.31
USP3-218ENST00000560202 SMARCC2Q8TAQ2 1214 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 ADARB2Q9NS39 739 aaKnown RBP13.12□□□□□ -0.31
USP3-218ENST00000560202 PGAP2Q9UHJ9 254 aa13.12□□□□□ -0.31
USP3-218ENST00000560202 PLIN4Q96Q06 1357 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 IGKV6D-41A0A0C4DH26 115 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 CPLX1O14810 134 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 CDC27P30260 824 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 ADD1P35611 737 aaKnown RBP13.11□□□□□ -0.31
USP3-218ENST00000560202 NOVP48745 357 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 HIRAP54198 1017 aaPredicted RBP13.11□□□□□ -0.31
USP3-218ENST00000560202 NUCB2P80303 420 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 CERKLQ49MI3 558 aaPredicted RBP13.11□□□□□ -0.31
USP3-218ENST00000560202 ANGEL2Q5VTE6 544 aaKnown RBP13.11□□□□□ -0.31
USP3-218ENST00000560202 CDAN1Q8IWY9 1227 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms