RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 ADD2P35612 726 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 GTF2A2P52657 109 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 EVX2Q03828 476 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 HDAC1Q13547 482 aaPredicted RBP11.65□□□□□ -0.55
SPG11-214ENST00000558989 RRP1BQ14684 758 aaKnown RBP11.65□□□□□ -0.55
SPG11-214ENST00000558989 SCYL3Q8IZE3 742 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 MS4A4AQ96JQ5 239 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 RIOK1Q9BRS2 568 aaKnown RBP11.65□□□□□ -0.55
SPG11-214ENST00000558989 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.65□□□□□ -0.55
SPG11-214ENST00000558989 RWDD1Q9H446 243 aaPredicted RBP11.65□□□□□ -0.55
SPG11-214ENST00000558989 ZHX2Q9Y6X8 837 aa11.65□□□□□ -0.55
SPG11-214ENST00000558989 TCRBV5S4A2TA0A5A2 114 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 TRIM75PA6NK02 468 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 GDF11O95390 407 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 BRD1O95696 1058 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 MX1P20591 662 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 PPIL2Q13356 520 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 DGKZQ13574 1117 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 SHROOM1Q2M3G4 852 aaPredicted RBP11.64□□□□□ -0.55
SPG11-214ENST00000558989 FAM43AQ8N2R8 423 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 ZNF296Q8WUU4 475 aaPredicted RBP11.64□□□□□ -0.55
SPG11-214ENST00000558989 GCC1Q96CN9 775 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 PI4KBQ9UBF8 816 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 ZSWIM8A7E2V4 1837 aa11.64□□□□□ -0.55
SPG11-214ENST00000558989 POLR3DP05423 398 aaPredicted RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 HLA-DOAP06340 250 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 PTPRAP18433 802 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 INHBEP58166 350 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 PPATQ06203 517 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 CRHR2Q13324 411 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 SNAPC2Q13487 334 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 TAF1CQ15572 869 aaPredicted RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 OTUD7BQ6GQQ9 843 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 CRNKL1Q9BZJ0 848 aaKnown RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 GPR25O00155 361 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 CYP2D6P10635 497 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 CETPP11597 493 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 NOL9Q5SY16 702 aaKnown RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 GADL1Q6ZQY3 521 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 STK11IPQ8N1F8 1099 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 PI4K2BQ8TCG2 481 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 PUS7LQ9H0K6 701 aaKnown RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 DHX36Q9H2U1 1008 aaKnown RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 DNAJC18Q9H819 358 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 CWC22Q9HCG8 908 aaKnown RBP11.63□□□□□ -0.55
SPG11-214ENST00000558989 MCM9Q9NXL9 1143 aa11.63□□□□□ -0.55
SPG11-214ENST00000558989 DDX60LQ5H9U9 1706 aaKnown RBP11.62□□□□□ -0.55
SPG11-214ENST00000558989 BTBD19C9JJ37 291 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 ERC2O15083 957 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 CTNND1O60716 968 aaKnown RBP11.62□□□□□ -0.55
SPG11-214ENST00000558989 ALDH1A1P00352 501 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 PLCD1P51178 756 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 FSD1Q9BTV5 496 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 TTC41PQ6P2S7 1318 aa11.62□□□□□ -0.55
SPG11-214ENST00000558989 COL2A1P02458 1487 aaPredicted RBP11.61□□□□□ -0.55
SPG11-214ENST00000558989 CYP2D7A0A087X1C5 515 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 TBC1D12O60347 775 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 CAP2P40123 477 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 JAG1P78504 1218 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 ZSCAN25Q6NSZ9 544 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 KBTBD3Q8NAB2 608 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 MCOLN1Q9GZU1 580 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 HERC5Q9UII4 1024 aaKnown RBP11.61□□□□□ -0.55
SPG11-214ENST00000558989 SLC4A4Q9Y6R1 1079 aa11.61□□□□□ -0.55
SPG11-214ENST00000558989 SMIM22K7EJ46 135 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 GLRX3O76003 335 aaKnown RBP11.6□□□□□ -0.55
SPG11-214ENST00000558989 MAP3K10Q02779 954 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 FOXP4Q8IVH2 680 aaPredicted RBP11.6□□□□□ -0.55
SPG11-214ENST00000558989 SEC62Q99442 399 aaKnown RBP11.6□□□□□ -0.55
SPG11-214ENST00000558989 DCP1AQ9NPI6 582 aaPredicted RBP11.6□□□□□ -0.55
SPG11-214ENST00000558989 M0R2C6 588 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 PDHXO00330 501 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 RNF113AO15541 343 aaKnown RBP11.6□□□□□ -0.55
SPG11-214ENST00000558989 FKTNO75072 461 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 PDE1AP54750 535 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 SPP2Q13103 211 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 AAMPQ13685 434 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 UBE3CQ15386 1083 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 IFFO2Q5TF58 517 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 TTC6Q86TZ1 520 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 CERS3Q8IU89 383 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 SLC44A5Q8NCS7 719 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 OSBP2Q969R2 916 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 DYNLL2Q96FJ2 89 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 ZFYVE28Q9HCC9 887 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 SERPINB13Q9UIV8 391 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 AFG3L2Q9Y4W6 797 aa11.6□□□□□ -0.55
SPG11-214ENST00000558989 TRIM6-TRIM34B2RNG4 842 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 CYP2C8P10632 490 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 ZYXQ15942 572 aaKnown RBP11.59□□□□□ -0.55
SPG11-214ENST00000558989 CHD1LQ86WJ1 897 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 SMC5Q8IY18 1101 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 CD99L2Q8TCZ2 262 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 CPA4Q9UI42 421 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 KCNH4Q9UQ05 1017 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 SSUH2Q9Y2M2 353 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 SALL3Q9BXA9 1300 aa11.59□□□□□ -0.55
SPG11-214ENST00000558989 CCDC85CA6NKD9 419 aa11.58□□□□□ -0.56
SPG11-214ENST00000558989 USP17L5A8MUK1 530 aa11.58□□□□□ -0.56
SPG11-214ENST00000558989 MPHOSPH10O00566 681 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms