RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EIF4BP23588 611 aaKnown RBP2.61□□□□□ -1.99
USP3-209ENST00000558925 ZNF76P36508 570 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 RACK1P63244 317 aaKnown RBP2.61□□□□□ -1.99
USP3-209ENST00000558925 GRM2Q14416 872 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 CYFIP1Q7L576 1253 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 GALNT12Q8IXK2 581 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 TOP6BLQ8N6T0 577 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 SREK1Q8WXA9 508 aaKnown RBP2.61□□□□□ -1.99
USP3-209ENST00000558925 RNF34Q969K3 372 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 FANCD2OSQ96PS1 177 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 TINF2Q9BSI4 451 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 BCO2Q9BYV7 579 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 ZCCHC4Q9H5U6 513 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 COPRSQ9NQ92 184 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 DISC1Q9NRI5 854 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 PPP1R1BQ9UD71 204 aaPredicted RBP2.61□□□□□ -1.99
USP3-209ENST00000558925 SPG7Q9UQ90 795 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 PCDHGC5Q9Y5F6 944 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 SNX11Q9Y5W9 270 aa2.61□□□□□ -1.99
USP3-209ENST00000558925 A0A096LPE4 126 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 A0A1W2PP55 124 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 A0A1W2PPZ6 126 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 ZNF862O60290 1169 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 TRIM13O60858 407 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 NEFMP07197 916 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 LIG1P18858 919 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 FGD1P98174 961 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 TTLL4Q14679 1199 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 NFIXQ14938 502 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 PRRT2Q7Z6L0 340 aaPredicted RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 SMYD4Q8IYR2 804 aaPredicted RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 TCF12Q99081 682 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 BCL11AQ9H165 835 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 CLEC4MQ9H2X3 399 aaPredicted RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 CCSER2Q9H7U1 834 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 CARS2Q9HA77 564 aaKnown RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 CAPN10Q9HC96 672 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 DCP1AQ9NPI6 582 aaPredicted RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 METTL5Q9NRN9 209 aaKnown RBP2.6□□□□□ -1.99
USP3-209ENST00000558925 NLRP2Q9NX02 1062 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 RTEL1Q9NZ71 1219 aa2.6□□□□□ -1.99
USP3-209ENST00000558925 B3GALT4O96024 378 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 NEFLP07196 543 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 EDN3P14138 238 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 HCLS1P14317 486 aaPredicted RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 FCGRTP55899 365 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 MAP3K11Q16584 847 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 ARHGAP27Q6ZUM4 889 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 USP48Q86UV5 1035 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 CCNJLQ8IV13 435 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 MARCH10Q8NA82 808 aaPredicted RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 C3orf58Q8NDZ4 430 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 ASB11Q8WXH4 323 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 DRC1Q96MC2 740 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 CORO1BQ9BR76 489 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 TGIF2Q9GZN2 237 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 XYLT2Q9H1B5 865 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 EHD4Q9H223 541 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 EPB41L4BQ9H329 900 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 CCDC86Q9H6F5 360 aaKnown RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 FAM8A1Q9UBU6 413 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 GGT7Q9UJ14 662 aa2.59□□□□□ -1.99
USP3-209ENST00000558925 DDX41Q9UJV9 622 aaKnown RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 TTF2Q9UNY4 1162 aaKnown RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.59□□□□□ -1.99
USP3-209ENST00000558925 USP31Q70CQ4 1352 aa2.59□□□□□ -2
USP3-209ENST00000558925 DNAJA1P31689 397 aaKnown RBP2.58□□□□□ -2
USP3-209ENST00000558925 GDNFP39905 211 aa2.58□□□□□ -2
USP3-209ENST00000558925 PTPN12Q05209 780 aaKnown RBP2.58□□□□□ -2
USP3-209ENST00000558925 PDE3AQ14432 1141 aa2.58□□□□□ -2
USP3-209ENST00000558925 TAF1CQ15572 869 aaPredicted RBP2.58□□□□□ -2
USP3-209ENST00000558925 KIAA0319Q5VV43 1072 aa2.58□□□□□ -2
USP3-209ENST00000558925 HS2ST1Q7LGA3 356 aa2.58□□□□□ -2
USP3-209ENST00000558925 ERMP1Q7Z2K6 904 aa2.58□□□□□ -2
USP3-209ENST00000558925 UBE3DQ7Z6J8 389 aa2.58□□□□□ -2
USP3-209ENST00000558925 CXorf38Q8TB03 319 aa2.58□□□□□ -2
USP3-209ENST00000558925 DHX38Q92620 1227 aaKnown RBP2.58□□□□□ -2
USP3-209ENST00000558925 PMEPA1Q969W9 287 aa2.58□□□□□ -2
USP3-209ENST00000558925 ISL2Q96A47 359 aa2.58□□□□□ -2
USP3-209ENST00000558925 FRMD6Q96NE9 622 aa2.58□□□□□ -2
USP3-209ENST00000558925 DNAJC2Q99543 621 aaKnown RBP2.58□□□□□ -2
USP3-209ENST00000558925 TANGO6Q9C0B7 1094 aa2.58□□□□□ -2
USP3-209ENST00000558925 ZC3H12CQ9C0D7 883 aaKnown RBP2.58□□□□□ -2
USP3-209ENST00000558925 LIN7BQ9HAP6 207 aa2.58□□□□□ -2
USP3-209ENST00000558925 PIDD1Q9HB75 910 aa2.58□□□□□ -2
USP3-209ENST00000558925 ATP13A1Q9HD20 1204 aa2.58□□□□□ -2
USP3-209ENST00000558925 ABCB6Q9NP58 842 aa2.58□□□□□ -2
USP3-209ENST00000558925 KBTBD4Q9NVX7 518 aa2.58□□□□□ -2
USP3-209ENST00000558925 SYNGAP1Q96PV0 1343 aa2.58□□□□□ -2
USP3-209ENST00000558925 CNTNAP4Q9C0A0 1308 aa2.58□□□□□ -2
USP3-209ENST00000558925 TMEM238LA0A1B0GVL6 79 aa2.57□□□□□ -2
USP3-209ENST00000558925 GIPC1O14908 333 aa2.57□□□□□ -2
USP3-209ENST00000558925 ADRB1P08588 477 aa2.57□□□□□ -2
USP3-209ENST00000558925 CELA3AP09093 270 aa2.57□□□□□ -2
USP3-209ENST00000558925 ZNF157P51786 506 aaPredicted RBP2.57□□□□□ -2
USP3-209ENST00000558925 ERVFC1P60507 584 aa2.57□□□□□ -2
USP3-209ENST00000558925 ID3Q02535 119 aa2.57□□□□□ -2
USP3-209ENST00000558925 PAK2Q13177 524 aa2.57□□□□□ -2
USP3-209ENST00000558925 PRPF40BQ6NWY9 871 aaKnown RBP2.57□□□□□ -2
USP3-209ENST00000558925 TPTE2Q6XPS3 522 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms