RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 POLRMTO00411 1230 aaKnown RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 SERPINB2P05120 415 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 NLRP12P59046 1061 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 CHMP4BP1P59074 171 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 FANCCQ00597 558 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 SF3B3Q15393 1217 aaKnown RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 LDHAL6AQ6ZMR3 332 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 FMR1NBQ8N0W7 255 aaPredicted RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 FSIP1Q8NA03 581 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 MRPS27Q92552 414 aaKnown RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 SDF4Q9BRK5 362 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 VIPAS39Q9H9C1 493 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 CNNM1Q9NRU3 951 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 FAN1Q9Y2M0 1017 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 A0A1B0GUL6 1792 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 STX10O60499 249 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 STAG1Q8WVM7 1258 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 RIPOR2Q9Y4F9 1068 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 MCM6Q14566 821 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 NCAPHQ15003 741 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 MSL1Q68DK7 614 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 ADALQ6DHV7 355 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 FOXR1Q6PIV2 292 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 CNNM3Q8NE01 707 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 CTCFLQ8NI51 663 aaPredicted RBP12.41□□□□□ -0.42
USP3-206ENST00000558157 NLRP3Q96P20 1036 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 EPC1Q9H2F5 836 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 DBNLQ9UJU6 430 aaKnown RBP12.41□□□□□ -0.42
USP3-206ENST00000558157 SUFUQ9UMX1 484 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 MYH15Q9Y2K3 1946 aa12.41□□□□□ -0.42
USP3-206ENST00000558157 ERLIN2O94905 339 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 METTL24Q5JXM2 366 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 VSTM4Q8IW00 320 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 SMARCC2Q8TAQ2 1214 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 GPR108Q9NPR9 543 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 ECHDC1Q9NTX5 307 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 CEP126Q9P2H0 1117 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 ANKRD31Q8N7Z5 1873 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 CUTAO60888 179 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 E2F4Q16254 413 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 DPCR1Q3MIW9 517 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 POTEDQ86YR6 584 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 NLGN1Q8N2Q7 840 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 WDR24Q96S15 920 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 DBNDD2Q9BQY9 259 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 ARAP2Q8WZ64 1704 aa12.4□□□□□ -0.42
USP3-206ENST00000558157 IGHMBP2P38935 993 aaKnown RBP12.39□□□□□ -0.43
USP3-206ENST00000558157 AARSP49588 968 aaKnown RBP eCLIP12.39□□□□□ -0.43
USP3-206ENST00000558157 TMEM139Q8IV31 216 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 MICALL1Q8N3F8 863 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 CDC5LQ99459 802 aaKnown RBP12.39□□□□□ -0.43
USP3-206ENST00000558157 ANKZF1Q9H8Y5 726 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 TOP1P11387 765 aaKnown RBP12.39□□□□□ -0.43
USP3-206ENST00000558157 ME1P48163 572 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 UBASH3AP57075 661 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 SETQ01105 290 aaPredicted RBP12.39□□□□□ -0.43
USP3-206ENST00000558157 VGLL2Q8N8G2 317 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 NEUROD6Q96NK8 337 aa12.39□□□□□ -0.43
USP3-206ENST00000558157 C21orf2O43822 256 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 PRR29P0C7W0 189 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 TIMM10P62072 90 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 CASP8Q14790 479 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 CELF1Q92879 486 aaKnown RBP12.38□□□□□ -0.43
USP3-206ENST00000558157 DHX58Q96C10 678 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 BAG1Q99933 345 aaPredicted RBP12.38□□□□□ -0.43
USP3-206ENST00000558157 CDC23Q9UJX2 597 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 ATXN2Q99700 1313 aaKnown RBP12.38□□□□□ -0.43
USP3-206ENST00000558157 DTNBO60941 627 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 SLC3A2P08195 630 aaKnown RBP12.38□□□□□ -0.43
USP3-206ENST00000558157 MMP10P09238 476 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 CALRP27797 417 aaKnown RBP12.38□□□□□ -0.43
USP3-206ENST00000558157 TDO2P48775 406 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 ANKRD18AQ8IVF6 992 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 AFAP1L1Q8TED9 768 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 USP28Q96RU2 1077 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 MROH5Q6ZUA9 1318 aa12.38□□□□□ -0.43
USP3-206ENST00000558157 JAK2O60674 1132 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 SHOX2O60902 331 aaPredicted RBP12.37□□□□□ -0.43
USP3-206ENST00000558157 ADORA1P30542 326 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 MNAT1P51948 309 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 TTLL5Q6EMB2 1281 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 HELBQ8NG08 1087 aaPredicted RBP12.37□□□□□ -0.43
USP3-206ENST00000558157 CCDC102AQ96A19 550 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 FAM204AQ9H8W3 233 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 RTEL1Q9NZ71 1219 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 MCM3P25205 808 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 KCNG4Q8TDN1 519 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 CCDC12Q8WUD4 166 aaPredicted RBP12.37□□□□□ -0.43
USP3-206ENST00000558157 ABCB6Q9NP58 842 aa12.37□□□□□ -0.43
USP3-206ENST00000558157 COL11A2P13942 1736 aaPredicted RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 SERPINC1P01008 464 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 HNRNPH1P31943 449 aaKnown RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 MYL5Q02045 173 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 TBX2Q13207 712 aaPredicted RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 WDR93Q6P2C0 686 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 DDX46Q7L014 1031 aaKnown RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 PDGFDQ9GZP0 370 aaPredicted RBP12.36□□□□□ -0.43
USP3-206ENST00000558157 BOLA2Q9H3K6 86 aa12.36□□□□□ -0.43
USP3-206ENST00000558157 MED23Q9ULK4 1368 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms