RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 PLEKHH3Q7Z736 793 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 CCAR1Q8IX12 1150 aaKnown RBP11.96□□□□□ -0.49
NEDD1-211ENST00000557454 ARRDC4Q8NCT1 418 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 NKX2-4Q9H2Z4 354 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 CD320Q9NPF0 282 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 SUGT1Q9Y2Z0 365 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 LRRC37A2A6NM11 1700 aa11.96□□□□□ -0.49
NEDD1-211ENST00000557454 DOCK2Q92608 1830 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 CYP2C19P33261 490 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 RGS3P49796 1198 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 FOXK2Q01167 660 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 MAP2K5Q13163 448 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 Q3C1V9 767 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 C1orf53Q5VUE5 145 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 ZSCAN29Q8IWY8 852 aaPredicted RBP11.95□□□□□ -0.5
NEDD1-211ENST00000557454 ZNF280CQ8ND82 737 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 PHOX2BQ99453 314 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 USP40Q9NVE5 1235 aa11.95□□□□□ -0.5
NEDD1-211ENST00000557454 C5orf42Q9H799 3197 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 PLXNA1Q9UIW2 1896 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 PQBP1O60828 265 aaKnown RBP11.94□□□□□ -0.5
NEDD1-211ENST00000557454 CYBAP13498 195 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 HERVK_113P62684 666 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 ERVK-9P63128 1117 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 ERVK-24P63145 666 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 MAP3K10Q02779 954 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 RAB30Q15771 203 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 CCDC57Q2TAC2 916 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 CCDC30Q5VVM6 783 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 CCDC146Q8IYE0 955 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 HERVK_113Q902F9 699 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 EDC3Q96F86 508 aaKnown RBP11.94□□□□□ -0.5
NEDD1-211ENST00000557454 PAGR1Q9BTK6 254 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 CWC22Q9HCG8 908 aaKnown RBP11.94□□□□□ -0.5
NEDD1-211ENST00000557454 MSRAQ9UJ68 235 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 NDUFB9Q9Y6M9 179 aa11.94□□□□□ -0.5
NEDD1-211ENST00000557454 DDTLA6NHG4 134 aaPredicted RBP11.93□□□□□ -0.5
NEDD1-211ENST00000557454 ST18O60284 1047 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 TMEM240Q5SV17 173 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 RASIP1Q5U651 963 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 LMBR1LQ6UX01 489 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 C8orf58Q8NAV2 365 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 PUS3Q9BZE2 481 aaKnown RBP11.93□□□□□ -0.5
NEDD1-211ENST00000557454 MYH16Q9H6N6 1097 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 SLC28A3Q9HAS3 691 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 TMEM39AQ9NV64 488 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 RBPJLQ9UBG7 517 aa11.93□□□□□ -0.5
NEDD1-211ENST00000557454 YBX2Q9Y2T7 364 aaKnown RBP11.93□□□□□ -0.5
NEDD1-211ENST00000557454 PRRC2BQ5JSZ5 2229 aaKnown RBP11.92□□□□□ -0.5
NEDD1-211ENST00000557454 CACNA1GO43497 2377 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 FAM196BA6NMK8 535 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 ATP2B2Q01814 1243 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 TRIM26Q12899 539 aaPredicted RBP11.92□□□□□ -0.5
NEDD1-211ENST00000557454 LRRC41Q15345 812 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 CAVIN4Q5BKX8 364 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 SH3D19Q5HYK7 790 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 EPHA10Q5JZY3 1008 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 C16orf59Q7L2K0 433 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 RFX7Q2KHR2 1363 aa11.92□□□□□ -0.5
NEDD1-211ENST00000557454 ENTPD3O75355 529 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 MTMR2Q13614 643 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 CSPP1Q1MSJ5 1256 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 G2E3Q7L622 706 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 SLC44A5Q8NCS7 719 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 NPLOC4Q8TAT6 608 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 IDI2Q9BXS1 227 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 KCNH6Q9H252 994 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 COG5Q9UP83 839 aa11.91□□□□□ -0.5
NEDD1-211ENST00000557454 SPTBN4Q9H254 2564 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 TRANK1O15050 2925 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 ZNF853P0CG23 659 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 PRDX5P30044 214 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 HOXA7P31268 230 aaPredicted RBP11.9□□□□□ -0.5
NEDD1-211ENST00000557454 FAM47AQ5JRC9 791 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 WDR78Q5VTH9 848 aa11.9□□□□□ -0.5
NEDD1-211ENST00000557454 DDX4Q9NQI0 724 aaKnown RBP11.9□□□□□ -0.5
NEDD1-211ENST00000557454 SLC15A5A6NIM6 579 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 TIMP1P01033 207 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 ACRP10323 421 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
NEDD1-211ENST00000557454 VASPP50552 380 aaPredicted RBP11.89□□□□□ -0.51
NEDD1-211ENST00000557454 FAAP100Q0VG06 881 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 PPIGQ13427 754 aaKnown RBP eCLIP11.89□□□□□ -0.51
NEDD1-211ENST00000557454 PICALMQ13492 652 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 PPP2R2DQ66LE6 453 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 CCDC174Q6PII3 467 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 ANKS1AQ92625 1134 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 HLA-CQ95604 372 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 TBC1D2Q9BYX2 928 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 PHF24Q9UPV7 400 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 MTCH2Q9Y6C9 303 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 CACNA1BQ00975 2339 aa11.89□□□□□ -0.51
NEDD1-211ENST00000557454 CLSPNQ9HAW4 1339 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 USP17L5A8MUK1 530 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 RFXAPO00287 272 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 SEPT4O43236 478 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 GLRX3O76003 335 aaKnown RBP11.88□□□□□ -0.51
NEDD1-211ENST00000557454 IGHA2P01877 340 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 HOXC6P09630 235 aa11.88□□□□□ -0.51
NEDD1-211ENST00000557454 PTPREP23469 700 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms