RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	EXOC4	Q96A65	974 aa		18.54	■□□□□ 0.56
SHMT2-231	ENST00000557433	NACAP1	Q9BZK3	213 aa		18.54	■□□□□ 0.56
SHMT2-231	ENST00000557433	RNF41	Q9H4P4	317 aa	Predicted RBP	18.54	■□□□□ 0.56
SHMT2-231	ENST00000557433	SENP2	Q9HC62	589 aa		18.54	■□□□□ 0.56
SHMT2-231	ENST00000557433	DENND2A	Q9ULE3	1009 aa		18.54	■□□□□ 0.56
SHMT2-231	ENST00000557433	ERLIN1	O75477	346 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	SASH3	O75995	380 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	XBP1	P17861	261 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	USP5	P45974	858 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	CNGA4	Q8IV77	575 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	LPIN2	Q92539	896 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	DHX58	Q96C10	678 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	MYO1A	Q9UBC5	1043 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	CDC23	Q9UJX2	597 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	TTF2	Q9UNY4	1162 aa	Known RBP	18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	ADGRG1	Q9Y653	693 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	MROH5	Q6ZUA9	1318 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	PRR29	P0C7W0	189 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	PBX1	P40424	430 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	CHMP4BP1	P59074	171 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	WTAP	Q15007	396 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	PUM3	Q15397	648 aa	Known RBP	18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	GSDMA	Q96QA5	445 aa		18.53	■□□□□ 0.56
SHMT2-231	ENST00000557433	ARAP2	Q8WZ64	1704 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	PNPLA7	Q6ZV29	1317 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	KDM4F	A0A1W2PPD8	638 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	MAP2K7	O14733	419 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	STARD3NL	O95772	234 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	HNRNPH2	P55795	449 aa	Known RBP	18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	RASGRP2	Q7LDG7	609 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	MSANTD4	Q8NCY6	345 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	FERMT2	Q96AC1	680 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	PYM1	Q9BRP8	204 aa	Known RBP	18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	GBP3	Q9H0R5	595 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	RAB21	Q9UL25	225 aa		18.52	■□□□□ 0.56
SHMT2-231	ENST00000557433	POLR3G	O15318	223 aa	Predicted RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	IL2RB	P14784	551 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	LONRF2	Q1L5Z9	754 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	CDKAL1	Q5VV42	579 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	SH3RF1	Q7Z6J0	888 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	CABLES1	Q8TDN4	633 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	RNF26	Q9BY78	433 aa	Predicted RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	STRN4	Q9NRL3	753 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	SAMSN1	Q9NSI8	373 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	CWC15	Q9P013	229 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	WWC3	Q9ULE0	1092 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	LRP5	O75197	1615 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	SYNRG	Q9UMZ2	1314 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	CHD4	Q14839	1912 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	EIF3J	O75822	258 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	TRIM14	Q14142	442 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	APTX	Q7Z2E3	356 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	CADPS2	Q86UW7	1296 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	NLRP10	Q86W26	655 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	IGSF22	Q8N9C0	903 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	NKX2-3	Q8TAU0	364 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	MYL10	Q9BUA6	226 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	GREM2	Q9H772	168 aa		18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	MRPL44	Q9H9J2	332 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	ADD3	Q9UEY8	706 aa	Known RBP	18.51	■□□□□ 0.55
SHMT2-231	ENST00000557433	TRIM75P	A6NK02	468 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	FGFR2	P21802	821 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	CUL4B	Q13620	913 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	TOM1L2	Q6ZVM7	507 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	HDX	Q7Z353	690 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	TMTC1	Q8IUR5	882 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	TRMT44	Q8IYL2	757 aa	Known RBP	18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	MED15	Q96RN5	788 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	PCDHB6	Q9Y5E3	794 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	RTL9	Q8NET4	1388 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	DOCK2	Q92608	1830 aa		18.5	■□□□□ 0.55
SHMT2-231	ENST00000557433	PDE8A	O60658	829 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	MFAP3L	O75121	409 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	SLC5A1	P13866	664 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	PHKA1	P46020	1223 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	SPAG1	Q07617	926 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	WHAMMP3	Q1A5X7	153 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	SPECC1	Q5M775	1068 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	SPATA5	Q8NB90	893 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	CCDC85A	Q96PX6	553 aa	Predicted RBP	18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	CARD10	Q9BWT7	1032 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	CSRNP2	Q9H175	543 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	MYH3	P11055	1940 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	CTAGE9	A4FU28	777 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	MBD4	O95243	580 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	GUCY1A2	P33402	732 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	PIP4K2B	P78356	416 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	IRX5	P78411	483 aa	Predicted RBP	18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	KARS	Q15046	597 aa	Known RBP	18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	FANCB	Q8NB91	859 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	DESI2	Q9BSY9	194 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	TMOD3	Q9NYL9	352 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	KCNJ14	Q9UNX9	436 aa		18.49	■□□□□ 0.55
SHMT2-231	ENST00000557433	GSG1L2	A8MUP6	293 aa		18.48	■□□□□ 0.55
SHMT2-231	ENST00000557433	GRIN1	Q05586	938 aa		18.48	■□□□□ 0.55
SHMT2-231	ENST00000557433	RBL2	Q08999	1139 aa		18.48	■□□□□ 0.55
SHMT2-231	ENST00000557433	PODXL2	Q9NZ53	605 aa		18.48	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms