RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CNKSR2Q8WXI2 1034 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 SNCAIPQ9Y6H5 919 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 TLL2Q9Y6L7 1015 aa15.22■□□□□ 0.03
SHMT2-227ENST00000557269 SLC3A2P08195 630 aaKnown RBP15.21■□□□□ 0.03
SHMT2-227ENST00000557269 GUCY1A2P33402 732 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 HUNKP57058 714 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 PDE4BQ07343 736 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 FAM47AQ5JRC9 791 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 MFSD6Q6ZSS7 791 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 ANKRD13AQ8IZ07 590 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 KCNB2Q92953 911 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.21■□□□□ 0.035e-8■■■□□ 18.8
SHMT2-227ENST00000557269 ELP3Q9H9T3 547 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 MKNK2Q9HBH9 465 aa15.21■□□□□ 0.03
SHMT2-227ENST00000557269 ABT1Q9ULW3 272 aaKnown RBP15.21■□□□□ 0.03
SHMT2-227ENST00000557269 E7EWF7 191 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 ORC4O43929 436 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 GH2P01242 217 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 ABCB5Q2M3G0 1257 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 RRP12Q5JTH9 1297 aaKnown RBP15.2■□□□□ 0.02
SHMT2-227ENST00000557269 NOL9Q5SY16 702 aaKnown RBP15.2■□□□□ 0.02
SHMT2-227ENST00000557269 CLEC10AQ8IUN9 316 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 SCYL3Q8IZE3 742 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 BACH2Q9BYV9 841 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 CREBZFQ9NS37 354 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 TAOK2Q9UL54 1235 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 ZBTB21Q9ULJ3 1066 aa15.2■□□□□ 0.02
SHMT2-227ENST00000557269 B4E1Z4 1266 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 MPHOSPH10O00566 681 aaKnown RBP15.19■□□□□ 0.02
SHMT2-227ENST00000557269 EPB41L2O43491 1005 aaKnown RBP15.19■□□□□ 0.02
SHMT2-227ENST00000557269 PTPRAP18433 802 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 GJA5P36382 358 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 SEPT2Q15019 361 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 ADCK5Q3MIX3 580 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 ZNF444Q8N0Y2 327 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-227ENST00000557269 TOMM22Q9NS69 142 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 SNX14Q9Y5W7 946 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 CSADQ9Y600 493 aa15.19■□□□□ 0.02
SHMT2-227ENST00000557269 RANBP6O60518 1105 aaKnown RBP15.18■□□□□ 0.02
SHMT2-227ENST00000557269 NMT2O60551 498 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 TFAP4Q01664 338 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 SIAH1Q8IUQ4 282 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 SLC10A4Q96EP9 437 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 CCDC17Q96LX7 622 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 RNF41Q9H4P4 317 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-227ENST00000557269 IL17RBQ9NRM6 502 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 DOCK1Q14185 1865 aa15.18■□□□□ 0.02
SHMT2-227ENST00000557269 ATAD5Q96QE3 1844 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 IGKV6D-41A0A0C4DH26 115 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 UNCXA6NJT0 531 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 KDM4AO75164 1064 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 PCP11498 1178 aaKnown RBP15.17■□□□□ 0.02
SHMT2-227ENST00000557269 RAB3GAP1Q15042 981 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 TSGA10IPQ3SY00 556 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 RNF20Q5VTR2 975 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 RGMBQ6NW40 437 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 CYB5R4Q7L1T6 521 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 OPTNQ96CV9 577 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 ZNF287Q9HBT7 754 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 PICK1Q9NRD5 415 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 ZSWIM5Q9P217 1185 aa15.17■□□□□ 0.02
SHMT2-227ENST00000557269 MYH8P13535 1937 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 GREB1LQ9C091 1923 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-227ENST00000557269 SPDYE5A6NIY4 337 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 RASSF10A6NK89 507 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 TSPY2A6NKD2 308 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 FAM155AB1AL88 458 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-227ENST00000557269 ASNSP08243 561 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 TSPY3P0CV98 308 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 TSPY8P0CW00 308 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 HSPA6P17066 643 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 ZNF157P51786 506 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-227ENST00000557269 MKRN3Q13064 507 aaKnown RBP15.16■□□□□ 0.02
SHMT2-227ENST00000557269 TMEM179Q6ZVK1 233 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 CHST3Q7LGC8 479 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 RASAL3Q86YV0 1011 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 MB21D2Q8IYB1 491 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-227ENST00000557269 NEDD1Q8NHV4 660 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 OTUD5Q96G74 571 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 ZKSCAN3Q9BRR0 538 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 CABP5Q9NP86 173 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 ZHX2Q9Y6X8 837 aa15.16■□□□□ 0.02
SHMT2-227ENST00000557269 USP17L5A8MUK1 530 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 CPA1P15085 419 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 ANTXR2P58335 489 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 SPRYD7Q5W111 196 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 CYP4F22Q6NT55 531 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 ERO1BQ86YB8 467 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 NCOA7Q8NI08 942 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 ACER1Q8TDN7 264 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 ESR2Q92731 530 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 CEP95Q96GE4 821 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 WNK4Q96J92 1243 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 HHIPL1Q96JK4 782 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 KRT23Q9C075 422 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 CNNM2Q9H8M5 875 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 AFG3L2Q9Y4W6 797 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 PHIPQ8WWQ0 1821 aa15.15■□□□□ 0.02
SHMT2-227ENST00000557269 PLIN4Q96Q06 1357 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 A0A1W2PRG0 241 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms