RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	TTLL6	Q8N841	843 aa		6.63	□□□□□ -1.35
SCFD1-223	ENST00000557076	WFDC12	Q8WWY7	111 aa		6.63	□□□□□ -1.35
SCFD1-223	ENST00000557076	C4B	P0C0L5	1744 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	CNTNAP4	Q9C0A0	1308 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076		A6NJR5	290 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	RASSF10	A6NK89	507 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	POLRMT	O00411	1230 aa	Known RBP	6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	SASH3	O75995	380 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	EGFR	P00533	1210 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	DDR1	Q08345	913 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	HSP90AB2P	Q58FF8	381 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	LDHD	Q86WU2	507 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	KIAA1210	Q9ULL0	1709 aa		6.62	□□□□□ -1.35
SCFD1-223	ENST00000557076	USP54	Q70EL1	1684 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	QRICH2	Q9H0J4	1663 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	TNRC18	O15417	2968 aa	Predicted RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	WDR33	Q9C0J8	1336 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	IQCA1L	A6NCM1	817 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	ERVV-2	B6SEH9	535 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	NFKBIE	O00221	500 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	EIF2AK2	P19525	551 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	NOS3	P29474	1203 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	IREB2	P48200	963 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	RRS1	Q15050	365 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	IFNL2	Q8IZJ0	200 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	KRTAP9-2	Q9BYQ4	174 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	SMG9	Q9H0W8	520 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	TLR7	Q9NYK1	1049 aa	Known RBP	6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	KIF13B	Q9NQT8	1826 aa		6.61	□□□□□ -1.35
SCFD1-223	ENST00000557076	RTL1	A6NKG5	1358 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	INSR	P06213	1382 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	FYB1	O15117	783 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	HYAL3	O43820	417 aa	Predicted RBP	6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	PLAUR	Q03405	335 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	FAM200A	Q8TCP9	573 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	SRA1	Q9HD15	236 aa	Known RBP	6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	C5	P01031	1676 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076	UBR3	Q6ZT12	1888 aa		6.6	□□□□□ -1.35
SCFD1-223	ENST00000557076		A0A1W2PP64	1363 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076		A0A0C4DFX4	3053 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	USP42	Q9H9J4	1324 aa	Known RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076		H0YIN7	160 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	DLL1	O00548	723 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	XYLB	O75191	536 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	DDN	O94850	711 aa	Predicted RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	PSAP	P07602	524 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	PHKG2	P15735	406 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	SOX18	P35713	384 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	SLC51A	Q86UW1	340 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	RBSN	Q9H1K0	784 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	TAF1D	Q9H5J8	278 aa	Predicted RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	SRP68	Q9UHB9	627 aa	Known RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	RNF112	Q9ULX5	631 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	TAF1L	Q8IZX4	1826 aa		6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	N4BP2	Q86UW6	1770 aa	Predicted RBP	6.59	□□□□□ -1.35
SCFD1-223	ENST00000557076	DOT1L	Q8TEK3	1739 aa		6.59	□□□□□ -1.36
SCFD1-223	ENST00000557076	SMG6	Q86US8	1419 aa	Known RBP	6.59	□□□□□ -1.36
SCFD1-223	ENST00000557076	OPLAH	O14841	1288 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	CA12	O43570	354 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	DEAF1	O75398	565 aa	Predicted RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	GHRH	P01286	108 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	HOXD8	P13378	290 aa	Predicted RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	ECE1	P42892	770 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	CRKL	P46109	303 aa	Known RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	TMEM132A	Q24JP5	1023 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	HFE2	Q6ZVN8	426 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	C2CD5	Q86YS7	1000 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	TREML1	Q86YW5	311 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	MAP4K3	Q8IVH8	894 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	CNTROB	Q8N137	903 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	CMTR1	Q8N1G2	835 aa	Known RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	PLD4	Q96BZ4	506 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	MEGF10	Q96KG7	1140 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	MRPL18	Q9H0U6	180 aa	Known RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	LRFN2	Q9ULH4	789 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	KIAA1551	Q9HCM1	1747 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	TNRC6C	Q9HCJ0	1690 aa	Known RBP	6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	SBF1	O95248	1867 aa		6.58	□□□□□ -1.36
SCFD1-223	ENST00000557076	ROCK2	O75116	1388 aa	Known RBP	6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	KIF24	Q5T7B8	1368 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	TONSL	Q96HA7	1378 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	LTBP3	Q9NS15	1303 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	TOGARAM1	Q9Y4F4	1720 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	HSP90AB1	P08238	724 aa	Known RBP	6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	MAP2K2	P36507	400 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	NFIX	Q14938	502 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	SWI5	Q1ZZU3	235 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	INTS5	Q6P9B9	1019 aa	Known RBP	6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	PRR23C	Q6ZRP0	262 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	PNMA8A	Q86V59	439 aa	Predicted RBP	6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	RGL4	Q8IZJ4	473 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	CACTIN-AS1	Q8N1I8	211 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	GPR101	Q96P66	508 aa	Predicted RBP	6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	MCOLN1	Q9GZU1	580 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	AKTIP	Q9H8T0	292 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	ARFGEF1	Q9Y6D6	1849 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	KDR	P35968	1356 aa		6.57	□□□□□ -1.36
SCFD1-223	ENST00000557076	FAM208A	Q9UK61	1670 aa	Known RBP	6.56	□□□□□ -1.36
SCFD1-223	ENST00000557076	MAP2	P11137	1827 aa	Known RBP	6.56	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms