RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GIMAP7Q8NHV1 300 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 NKD1Q969G9 470 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 DPH2Q9BQC3 489 aaPredicted RBP7.62□□□□□ -1.19
SCFD1-221ENST00000556534 PRDM10Q9NQV6 1147 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 ATG3Q9NT62 314 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 RNF112Q9ULX5 631 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 PCDHB14Q9Y5E9 798 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 ATE1O95260 518 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 ERCC5P28715 1186 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-221ENST00000556534 GJA8P48165 433 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 CYP27A1Q02318 531 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 SLC6A19Q695T7 634 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 MCATQ8IVS2 390 aaKnown RBP7.61□□□□□ -1.19
SCFD1-221ENST00000556534 ACBD3Q9H3P7 528 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 CCSER2Q9H7U1 834 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 PIM2Q9P1W9 311 aa7.61□□□□□ -1.19
SCFD1-221ENST00000556534 SLITRK5O94991 958 aa7.6□□□□□ -1.19
SCFD1-221ENST00000556534 REXO1Q8N1G1 1221 aaKnown RBP7.6□□□□□ -1.19
SCFD1-221ENST00000556534 GPRASP2Q96D09 838 aa7.6□□□□□ -1.19
SCFD1-221ENST00000556534 MIPEPQ99797 713 aa7.6□□□□□ -1.19
SCFD1-221ENST00000556534 EHMT1Q9H9B1 1298 aa7.6□□□□□ -1.19
SCFD1-221ENST00000556534 U3KQE9 123 aa7.6□□□□□ -1.19
SCFD1-221ENST00000556534 CLCQ05315 142 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 ZMYM1Q5SVZ6 1142 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 MFSD2AQ8NA29 543 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 FAM13CQ8NE31 585 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 RASGRP4Q8TDF6 673 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 KLHL3Q9UH77 587 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 LEMD3Q9Y2U8 911 aa7.59□□□□□ -1.19
SCFD1-221ENST00000556534 UPK3BL1B0FP48 263 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 UPK3BL2E5RIL1 263 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 EOMESO95936 686 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 FOSL1P15407 271 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 HOXA10P31260 410 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-221ENST00000556534 TNNI2P48788 182 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 ZNF165P49910 485 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 CYP27C1Q4G0S4 372 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 DUSP27Q5VZP5 1158 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 GK5Q6ZS86 529 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 SLFN12Q8IYM2 578 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 XAGE3Q8WTP9 111 aa7.58□□□□□ -1.2
SCFD1-221ENST00000556534 CHURC1-FNTBB4DL54 471 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 MCM4P33991 863 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 CD97P48960 835 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 MSMPQ1L6U9 139 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 OVOS1Q6IE37 1185 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 LETMD1Q6P1Q0 360 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 DNAJB8Q8NHS0 232 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 CYB5D2Q8WUJ1 264 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 HEXIM2Q96MH2 286 aaKnown RBP7.57□□□□□ -1.2
SCFD1-221ENST00000556534 GMIPQ9P107 970 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 ZNRF3Q9ULT6 936 aa7.57□□□□□ -1.2
SCFD1-221ENST00000556534 MEIS3P2A8K0S8 358 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 MED26O95402 600 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 SOX9P48436 509 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 YARSP54577 528 aaKnown RBP7.56□□□□□ -1.2
SCFD1-221ENST00000556534 FAM181AQ8N9Y4 354 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 LRRC4CQ9HCJ2 640 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 GINM1Q9NU53 330 aa7.56□□□□□ -1.2
SCFD1-221ENST00000556534 SLC22A31A6NKX4 558 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 KIAA1324LA8MWY0 1029 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-221ENST00000556534 CYP26A1O43174 497 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 COBLO75128 1261 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 COL9A2Q14055 689 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-221ENST00000556534 RIN3Q8TB24 985 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 PPP1R13LQ8WUF5 828 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 SPATA32Q96LK8 384 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 TINF2Q9BSI4 451 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 ANTXR1Q9H6X2 564 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 PPT2Q9UMR5 302 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 MAPK8IP1Q9UQF2 711 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 EFR3BQ9Y2G0 817 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 INPP5FQ9Y2H2 1132 aa7.55□□□□□ -1.2
SCFD1-221ENST00000556534 CNTNAP4Q9C0A0 1308 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 RBAK-RBAKDNI3L0D1 243 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 IGF2BP3O00425 579 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCFD1-221ENST00000556534 SPINK2P20155 84 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 SSTR4P31391 388 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 GRIK1P39086 918 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 LRP8Q14114 963 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 MLECQ14165 292 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 INTS5Q6P9B9 1019 aaKnown RBP7.54□□□□□ -1.2
SCFD1-221ENST00000556534 TMEM40Q8WWA1 233 aa7.54□□□□□ -1.2
SCFD1-221ENST00000556534 PRDM5Q9NQX1 630 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-221ENST00000556534 ZC3H7BQ9UGR2 993 aaKnown RBP7.54□□□□□ -1.2
SCFD1-221ENST00000556534 OXCT1P55809 520 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 ARSHQ5FYA8 562 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 C22orf34Q6ZV56 151 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 CNNM2Q9H8M5 875 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 MKNK2Q9HBH9 465 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 GTF2IRD1Q9UHL9 959 aa7.53□□□□□ -1.2
SCFD1-221ENST00000556534 COL17A1Q9UMD9 1497 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-221ENST00000556534 CEACAM5P06731 702 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 IMPDH2P12268 514 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 CDCP2Q5VXM1 449 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 ZNF746Q6NUN9 644 aaPredicted RBP7.52□□□□□ -1.21
SCFD1-221ENST00000556534 CCDC81Q6ZN84 652 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 NLRC3Q7RTR2 1065 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 CDH24Q86UP0 819 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms