RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MFSD2AQ8NA29 543 aa7.17□□□□□ -1.26
SCFD1-219ENST00000556413 FRMD6Q96NE9 622 aa7.17□□□□□ -1.26
SCFD1-219ENST00000556413 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.16□□□□□ -1.26
SCFD1-219ENST00000556413 AFMP43652 599 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 FGD1P98174 961 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 MFSD4AQ8N468 514 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 FAM84AQ96KN4 292 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 SLC38A3Q99624 504 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 FAM53CQ9NYF3 392 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 CAPN6Q9Y6Q1 641 aa7.16□□□□□ -1.26
SCFD1-219ENST00000556413 H3BS24 57 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 RBAK-RBAKDNI3L0D1 243 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 GNA15P30679 374 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 GRK4P32298 578 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 MLANAQ16655 118 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 PRAMEF13Q5VWM6 474 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 LETMD1Q6P1Q0 360 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 NPAS4Q8IUM7 802 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 LIN37Q96GY3 246 aaPredicted RBP7.15□□□□□ -1.26
SCFD1-219ENST00000556413 KRTAP4-7Q9BYR0 210 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 C19orf73Q9NVV2 129 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 ST14Q9Y5Y6 855 aa7.15□□□□□ -1.26
SCFD1-219ENST00000556413 GFRA2O00451 464 aa7.14□□□□□ -1.27
SCFD1-219ENST00000556413 CST3P01034 146 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-219ENST00000556413 EIF4BP23588 611 aaKnown RBP7.14□□□□□ -1.27
SCFD1-219ENST00000556413 CCDC85BQ15834 202 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-219ENST00000556413 XAGE3Q8WTP9 111 aa7.14□□□□□ -1.27
SCFD1-219ENST00000556413 TIMELESSQ9UNS1 1208 aa7.14□□□□□ -1.27
SCFD1-219ENST00000556413 PCDHB5Q9Y5E4 795 aa7.14□□□□□ -1.27
SCFD1-219ENST00000556413 CBX7O95931 251 aa7.13□□□□□ -1.27
SCFD1-219ENST00000556413 RPS26P62854 115 aaKnown RBP7.13□□□□□ -1.27
SCFD1-219ENST00000556413 SEPT6Q14141 434 aa7.13□□□□□ -1.27
SCFD1-219ENST00000556413 GLI1P08151 1106 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 GDNFP39905 211 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 ZNF746Q6NUN9 644 aaPredicted RBP7.12□□□□□ -1.27
SCFD1-219ENST00000556413 SPOCD1Q6ZMY3 1216 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 THAP5Q7Z6K1 395 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 BHLHE22Q8NFJ8 381 aaPredicted RBP7.12□□□□□ -1.27
SCFD1-219ENST00000556413 KIRREL1Q96J84 757 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 RNF19AQ9NV58 838 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 AK5Q9Y6K8 562 aa7.12□□□□□ -1.27
SCFD1-219ENST00000556413 PRPF40AO75400 957 aaKnown RBP7.11□□□□□ -1.27
SCFD1-219ENST00000556413 LMNB1P20700 586 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 AGMOQ6ZNB7 445 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 CDH24Q86UP0 819 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 UBE2FQ969M7 185 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 TJP2Q9UDY2 1190 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 TACC3Q9Y6A5 838 aa7.11□□□□□ -1.27
SCFD1-219ENST00000556413 TNK2Q07912 1038 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 FBLN7Q53RD9 439 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 TMEM67Q5HYA8 995 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 PRR23BQ6ZRT6 265 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 CILP2Q8IUL8 1156 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 MRPL41Q8IXM3 137 aaKnown RBP7.1□□□□□ -1.27
SCFD1-219ENST00000556413 ZSWIM5Q9P217 1185 aa7.1□□□□□ -1.27
SCFD1-219ENST00000556413 PGRP06401 933 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 CYP7A1P22680 504 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 KIR3DL1P43629 444 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 LIG3P49916 1009 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 MAP3K11Q16584 847 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 LCE4AQ5TA78 99 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 MPZL3Q6UWV2 235 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 COX4I2Q96KJ9 171 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 ALPK1Q96QP1 1244 aa7.09□□□□□ -1.27
SCFD1-219ENST00000556413 DUSP9Q99956 384 aaKnown RBP7.09□□□□□ -1.27
SCFD1-219ENST00000556413 DPH2Q9BQC3 489 aaPredicted RBP7.09□□□□□ -1.27
SCFD1-219ENST00000556413 TMEM87BQ96K49 555 aa7.08□□□□□ -1.28
SCFD1-219ENST00000556413 MIR1-1HGQ9H1L0 117 aa7.08□□□□□ -1.28
SCFD1-219ENST00000556413 TSPAN15O95858 294 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 ESR1P03372 595 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 TFE3P19532 575 aaPredicted RBP7.07□□□□□ -1.28
SCFD1-219ENST00000556413 RAP1GAPP47736 663 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 MEI1Q5TIA1 1274 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 SLC6A19Q695T7 634 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 SYDE1Q6ZW31 735 aaPredicted RBP7.07□□□□□ -1.28
SCFD1-219ENST00000556413 CCDC120Q96HB5 630 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 SLAMF8Q9P0V8 285 aa7.07□□□□□ -1.28
SCFD1-219ENST00000556413 TTC6Q86TZ1 520 aa7.06□□□□□ -1.28
SCFD1-219ENST00000556413 MCATQ8IVS2 390 aaKnown RBP7.06□□□□□ -1.28
SCFD1-219ENST00000556413 PIWIL2Q8TC59 973 aaKnown RBP7.06□□□□□ -1.28
SCFD1-219ENST00000556413 PPP1R16BQ96T49 567 aa7.06□□□□□ -1.28
SCFD1-219ENST00000556413 DNAJC25-GNG10A0A024R161 153 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 ANKRD33BA6NCL7 494 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 WASH4PA8MWX3 477 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 KRT1P04264 644 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 CFPP27918 469 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 ETV3P41162 512 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 PDE4BQ07343 736 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 TSNAXIP1Q2TAA8 658 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 KRTAP19-4Q3LI73 84 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 EAPPQ56P03 285 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-219ENST00000556413 RALGPS1Q5JS13 557 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 TMPRSS7Q7RTY8 843 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 DNAJB8Q8NHS0 232 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 JARID2Q92833 1246 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-219ENST00000556413 ACSF2Q96CM8 615 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-219ENST00000556413 Q96M66 194 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 DIRC2Q96SL1 478 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 TRAIPQ9BWF2 469 aa7.05□□□□□ -1.28
SCFD1-219ENST00000556413 TLR6Q9Y2C9 796 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms