RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 CCDC93Q567U6 631 aa11.89□□□□□ -0.51
GTF2A1-204ENST00000556268 GALNT6Q8NCL4 622 aa11.89□□□□□ -0.51
GTF2A1-204ENST00000556268 CEP63Q96MT8 703 aa11.89□□□□□ -0.51
GTF2A1-204ENST00000556268 NIP7Q9Y221 180 aaKnown RBP eCLIP11.89□□□□□ -0.519e-7■□□□□ 8.5
GTF2A1-204ENST00000556268 NEURL1BA8MQ27 555 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 ERVV-1B6SEH8 477 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 NPHP1O15259 732 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 PRMT3O60678 531 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 U2AF1L5P0DN76 240 aaPredicted RBP11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 U2AF1Q01081 240 aaKnown RBP eCLIP11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 CNGB1Q14028 1251 aaPredicted RBP11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 DCTN1Q14203 1278 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 CRY2Q49AN0 593 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 TMEM164Q5U3C3 297 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 OLFM4Q6UX06 510 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 EDARADDQ8WWZ3 215 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 PRIMPOLQ96LW4 560 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 BRD7Q9NPI1 651 aa11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 DNMT3AQ9Y6K1 912 aaPredicted RBP11.88□□□□□ -0.51
GTF2A1-204ENST00000556268 RNF225M0QZC1 329 aaPredicted RBP11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 HOXA10P31260 410 aaPredicted RBP11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 HIF1AQ16665 826 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 ZNF468Q5VIY5 522 aaPredicted RBP11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 SYNE4Q8N205 404 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 ZNF277Q9NRM2 450 aaPredicted RBP11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 MIS18AQ9NYP9 233 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 KLF15Q9UIH9 416 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 CNTNAP1P78357 1384 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 SCN7AQ01118 1682 aa11.87□□□□□ -0.51
GTF2A1-204ENST00000556268 COL11A2P13942 1736 aaPredicted RBP11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 ADH6P28332 368 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 GSK3AP49840 483 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 KCNMA1Q12791 1236 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 FKBP5Q13451 457 aaPredicted RBP11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 OCLNQ16625 522 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 BTLAQ7Z6A9 289 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 VTI1AQ96AJ9 217 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 PSMD1Q99460 953 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 AVENQ9NQS1 362 aaPredicted RBP11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 PRDM10Q9NQV6 1147 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 HACL1Q9UJ83 578 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 PRR12Q9ULL5 1215 aa11.86□□□□□ -0.51
GTF2A1-204ENST00000556268 TMEM88BA6NKF7 163 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 EPXP11678 715 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 EPHX2P34913 555 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 IARSP41252 1262 aaKnown RBP11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 PCBP4P57723 403 aaKnown RBP11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 PNMA8AQ86V59 439 aaPredicted RBP11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 FCHSD1Q86WN1 690 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 SCARF2Q96GP6 870 aaPredicted RBP11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 KLK14Q9P0G3 267 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 TIAM2Q8IVF5 1701 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 SNED1Q8TER0 1413 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 ZNF541Q9H0D2 1346 aa11.85□□□□□ -0.51
GTF2A1-204ENST00000556268 FOXN1O15353 648 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 EIF4A1P60842 406 aaKnown RBP11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 CNTROBQ8N137 903 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 GPC2Q8N158 579 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 PLEKHF1Q96S99 279 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 SLC30A3Q99726 388 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 NYXQ9GZU5 481 aa11.84□□□□□ -0.51
GTF2A1-204ENST00000556268 SCN4AP35499 1836 aa11.83□□□□□ -0.51
GTF2A1-204ENST00000556268 RASSF10A6NK89 507 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 TGFBR3LH3BV60 316 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 DGKZQ13574 1117 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 IER5Q5VY09 327 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 ZNF34Q8IZ26 560 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 PNISRQ8TF01 805 aaKnown RBP11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 CRAMP1Q96RY5 1269 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 MAP3K15Q6ZN16 1313 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 CNTNAP5Q8WYK1 1306 aa11.83□□□□□ -0.52
GTF2A1-204ENST00000556268 FAM177BA6PVY3 158 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 IRS1P35568 1242 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 CTCFP49711 727 aaPredicted RBP11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 SLC10A5Q5PT55 438 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 TTLL7Q6ZT98 887 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 KCNH4Q9UQ05 1017 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 BCORQ6W2J9 1755 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 ARFGEF2Q9Y6D5 1785 aa11.82□□□□□ -0.52
GTF2A1-204ENST00000556268 AMPD1P23109 780 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 SNRPNP63162 240 aaKnown RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 SPEM2Q0P670 501 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 DEFB115Q30KQ5 88 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 EAPPQ56P03 285 aaPredicted RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 SUSD4Q5VX71 490 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 MAP1SQ66K74 1059 aaPredicted RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 LRP10Q7Z4F1 713 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 RAB44Q7Z6P3 723 aaPredicted RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 SYT9Q86SS6 491 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 JDP2Q8WYK2 163 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 MYO19Q96H55 970 aa11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 DMGDHQ9UI17 866 aaKnown RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 RRP7AQ9Y3A4 280 aaKnown RBP11.81□□□□□ -0.52
GTF2A1-204ENST00000556268 PODNQ7Z5L7 613 aa11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 NGEFQ8N5V2 710 aa11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 VPS33BQ9H267 617 aa11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 CXXC1Q9P0U4 656 aaPredicted RBP11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 RNF123Q5XPI4 1314 aa11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 UBN2Q6ZU65 1347 aa11.8□□□□□ -0.52
GTF2A1-204ENST00000556268 RIC1Q4ADV7 1423 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms