RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 GABRQQ9UN88 632 aa11.33□□□□□ -0.6
VIPAS39-207ENST00000555854 DOCK3Q8IZD9 2030 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 USP17L5A8MUK1 530 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 SMARCA5O60264 1052 aaPredicted RBP11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 RAB11FIP3O75154 756 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 EN2P19622 333 aaPredicted RBP11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 MAP3K12Q12852 859 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 MTMR2Q13614 643 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 POTEEQ6S8J3 1075 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 LCORLQ8N3X6 602 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 SHISA4Q96DD7 197 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 WDR18Q9BV38 432 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 MYH7P12883 1935 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 MYPNQ86TC9 1320 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 ZNF532Q9HCE3 1301 aa11.32□□□□□ -0.6
VIPAS39-207ENST00000555854 RANBP2P49792 3224 aaKnown RBP11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 PLXNB2O15031 1838 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 SMIM22K7EJ46 135 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 PEX10O60683 326 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 MYCP01106 439 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 GNRH1P01148 92 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 IFIT2P09913 472 aaKnown RBP11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 SHMT1P34896 483 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 PLCD1P51178 756 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 GABPAQ06546 454 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 KIF22Q14807 665 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 MTFR1Q15390 333 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 SLC9C2Q5TAH2 1124 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 TATDN1Q6P1N9 297 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 TMED8Q6PL24 325 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 FOXP4Q8IVH2 680 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 TBC1D2Q9BYX2 928 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 EHD4Q9H223 541 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 BOLA2Q9H3K6 86 aa11.31□□□□□ -0.6
VIPAS39-207ENST00000555854 MAGEB6P1A0A0J9YX57 407 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 FMNL1O95466 1100 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 GH2P01242 217 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 HLA-DOAP06340 250 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ASNSP08243 561 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 CYP2D6P10635 497 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ATP5JP18859 108 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 GUCY1A2P33402 732 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ADD2P35612 726 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 USP5P45974 858 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 PRMT2P55345 433 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 FCGRTP55899 365 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 BACE1P56817 501 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ARHGEF6Q15052 776 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 TTF1Q15361 905 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 FAM110CQ1W6H9 321 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 CRACR2BQ8N4Y2 399 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ANKRD13CQ8N6S4 541 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 SMCR8Q8TEV9 937 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 SDR42E1Q8WUS8 393 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 HAUS7Q99871 368 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 BCL11AQ9H165 835 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 ASCC2Q9H1I8 757 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 PAG1Q9NWQ8 432 aa11.3□□□□□ -0.6
VIPAS39-207ENST00000555854 BAZ2AQ9UIF9 1905 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 PRKAB2O43741 272 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 PRPF38BQ5VTL8 546 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 TSHZ3Q63HK5 1081 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 LRRCC1Q9C099 1032 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 ARMT1Q9H993 441 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 AS3MTQ9HBK9 375 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 TXNRD2Q9NNW7 524 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 DCP1AQ9NPI6 582 aaPredicted RBP11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 EMILIN3Q9NT22 766 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 SERPINB13Q9UIV8 391 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 PCDHB15Q9Y5E8 787 aa11.29□□□□□ -0.6
VIPAS39-207ENST00000555854 MBD4O95243 580 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 HOXA7P31268 230 aaPredicted RBP11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 GRK4P32298 578 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 FLT3LGP49771 235 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 RRP1P56182 461 aaKnown RBP11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 SLC44A5Q8NCS7 719 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 RAET1EQ8TD07 263 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 ACER1Q8TDN7 264 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 C12orf42Q96LP6 360 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 CHMP4BQ9H444 224 aaKnown RBP11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 DCTPP1Q9H773 170 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 GINM1Q9NU53 330 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 MORF4L1Q9UBU8 362 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 PNMA3Q9UL41 463 aa11.28□□□□□ -0.6
VIPAS39-207ENST00000555854 A0A0G2JMZ2 1700 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 USP17L10C9JJH3 530 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 TNPO2O14787 897 aaKnown RBP11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 ELNP15502 786 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 HERVK_113P62684 666 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 NBPF11Q86T75 865 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 OTUD7AQ8TE49 926 aaPredicted RBP11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 TRIM34Q9BYJ4 488 aa11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 CRNKL1Q9BZJ0 848 aaKnown RBP11.27□□□□□ -0.61
VIPAS39-207ENST00000555854 CYP2D7A0A087X1C5 515 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 A0A1W2PRG0 241 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 CNMDO75829 334 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 HOXD10P28358 340 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 IRF5Q13568 498 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 UBE3CQ15386 1083 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms