RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 HOXB7P09629 217 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 PSMC4P43686 418 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 TTC38Q5R3I4 469 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 USP28Q96RU2 1077 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 TRIM31Q9BZY9 425 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 GJC1P36383 396 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 PEX19P40855 299 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 ANKRD20A3Q5VUR7 823 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 SFMBT2Q5VUG0 894 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 PEX26Q7Z412 305 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 BCAP29Q9UHQ4 241 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 KDM5DQ9BY66 1539 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 RAPGEF3O95398 923 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 STX2P32856 288 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 RPUSD2Q8IZ73 545 aaKnown RBP19.47■□□□□ 0.71
SYNE3-204ENST00000555759 PDLIM2Q96JY6 352 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 IMPG2Q9BZV3 1241 aa19.47■□□□□ 0.71
SYNE3-204ENST00000555759 FLT4P35916 1363 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 CCDC152Q4G0S7 254 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 PPIP5K1Q6PFW1 1433 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 ABCC2Q92887 1545 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 CHL1O00533 1208 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 HLA-DOAP06340 250 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 TNNI3KQ59H18 835 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 OTUD7BQ6GQQ9 843 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 MAIP1Q8WWC4 291 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 FPGT-TNNI3KV9GXZ4 949 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 CWF19L2Q2TBE0 894 aaKnown RBP19.46■□□□□ 0.71
SYNE3-204ENST00000555759 DSCC1Q9BVC3 393 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 PEG3Q9GZU2 1588 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 TROVE2P10155 538 aaKnown RBP eCLIP19.46■□□□□ 0.71
SYNE3-204ENST00000555759 GUCY2FP51841 1108 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 EPHB4P54760 987 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 KLHL30Q0D2K2 578 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 DCAF17Q5H9S7 520 aaPredicted RBP19.46■□□□□ 0.71
SYNE3-204ENST00000555759 MAP3K21Q5TCX8 1036 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 KBTBD3Q8NAB2 608 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 ZNF526Q8TF50 670 aaPredicted RBP19.46■□□□□ 0.71
SYNE3-204ENST00000555759 SAMM50Q9Y512 469 aa19.46■□□□□ 0.71
SYNE3-204ENST00000555759 CLTAP09496 248 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 DNM2P50570 870 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 G2E3Q7L622 706 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 PSMB7Q99436 277 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 PALD1Q9ULE6 856 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 RABGAP1Q9Y3P9 1069 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 PFKFB2O60825 505 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 KIFAP3Q92845 792 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 PARD6BQ9BYG5 372 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 KDM5BQ9UGL1 1544 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 CCDC14Q49A88 953 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 BEND3Q5T5X7 828 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 CERS3Q8IU89 383 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 COMMD10Q9Y6G5 202 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 CCDC197Q8NCU1 140 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 MSANTD4Q8NCY6 345 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 FANCLQ9NW38 375 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 ASIC3Q9UHC3 531 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 SERTAD1Q9UHV2 236 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 SPATA1Q5VX52 437 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 TRIM68Q6AZZ1 485 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 APPBP2Q92624 585 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 FRMD4BQ9Y2L6 1034 aa19.45■□□□□ 0.7
SYNE3-204ENST00000555759 A0A1W2PP64 1363 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 PLIN2Q99541 437 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 MAPK8IP1Q9UQF2 711 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 KIAA0232Q92628 1395 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 KCNJ18B7U540 433 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 KCNJ12Q14500 433 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 ZKSCAN8Q15776 578 aaPredicted RBP19.44■□□□□ 0.7
SYNE3-204ENST00000555759 SDCCAG8Q86SQ7 713 aaPredicted RBP19.44■□□□□ 0.7
SYNE3-204ENST00000555759 TMEM87AQ8NBN3 555 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.44■□□□□ 0.7
SYNE3-204ENST00000555759 EPN1Q9Y6I3 576 aaPredicted RBP19.44■□□□□ 0.7
SYNE3-204ENST00000555759 MORC2Q9Y6X9 1032 aaPredicted RBP19.44■□□□□ 0.7
SYNE3-204ENST00000555759 PNMA6EA0A0J9YXQ4 647 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 CCDC169A6NNP5 214 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 IFT88Q13099 833 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 PZPP20742 1482 aa19.44■□□□□ 0.7
SYNE3-204ENST00000555759 SMIM24O75264 130 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 TRPC3Q13507 836 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 SHANK2Q9UPX8 1470 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 TPCN1Q9ULQ1 816 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 PCDHA7Q9UN72 937 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 I3L4J1 428 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 TYW1BQ6NUM6 668 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 TADA2BQ86TJ2 420 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 CALUO43852 315 aaPredicted RBP19.43■□□□□ 0.7
SYNE3-204ENST00000555759 NPATQ14207 1427 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 SPATA31E1Q6ZUB1 1445 aa19.43■□□□□ 0.7
SYNE3-204ENST00000555759 B4E1Z4 1266 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 EVI5O60447 810 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 HMGB2P26583 209 aaKnown RBP19.42■□□□□ 0.7
SYNE3-204ENST00000555759 JPH2Q9BR39 696 aaPredicted RBP19.42■□□□□ 0.7
SYNE3-204ENST00000555759 OSBPL3Q9H4L5 887 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 VCX3AQ9NNX9 186 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 FAM169AQ9Y6X4 670 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 H7C1D1 291 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 P3H4Q92791 437 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 SUN1O94901 812 aa19.42■□□□□ 0.7
SYNE3-204ENST00000555759 SLMAPQ14BN4 828 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms