RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 RASGRF1Q13972 1273 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 TJAP1Q5JTD0 557 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 CCDC102BQ68D86 513 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 PLEKHH3Q7Z736 793 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 CCAR1Q8IX12 1150 aaKnown RBP12□□□□□ -0.49
SCFD1-215ENST00000555259 WDR18Q9BV38 432 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 SIL1Q9H173 461 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 TMOD4Q9NZQ9 345 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 CEP126Q9P2H0 1117 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 DDX20Q9UHI6 824 aaKnown RBP12□□□□□ -0.49
SCFD1-215ENST00000555259 RAPGEFL1Q9UHV5 662 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 DNM1LO00429 736 aa11.99□□□□□ -0.49
SCFD1-215ENST00000555259 CIAO1O76071 339 aa11.99□□□□□ -0.49
SCFD1-215ENST00000555259 ZNF384Q8TF68 577 aa11.99□□□□□ -0.49
SCFD1-215ENST00000555259 LPAR1Q92633 364 aa11.99□□□□□ -0.49
SCFD1-215ENST00000555259 ATP11BQ9Y2G3 1177 aa11.99□□□□□ -0.49
SCFD1-215ENST00000555259 MSCO60682 206 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 ADORA1P30542 326 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 MECOMQ03112 1051 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 MAP2K5Q13163 448 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 MFSD14CQ5VZR4 134 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 SPTY2D1Q68D10 685 aaPredicted RBP11.98□□□□□ -0.49
SCFD1-215ENST00000555259 POTEEQ6S8J3 1075 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 PAGR1Q9BTK6 254 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 FLRT1Q9NZU1 646 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 HERC5Q9UII4 1024 aaKnown RBP11.98□□□□□ -0.49
SCFD1-215ENST00000555259 FBXO3Q9UK99 471 aa11.98□□□□□ -0.49
SCFD1-215ENST00000555259 PDS5AQ29RF7 1337 aaKnown RBP11.98□□□□□ -0.49
SCFD1-215ENST00000555259 C19orf81C9J6K1 198 aa11.97□□□□□ -0.49
SCFD1-215ENST00000555259 ASNSP08243 561 aa11.97□□□□□ -0.49
SCFD1-215ENST00000555259 USP38Q8NB14 1042 aa11.97□□□□□ -0.49
SCFD1-215ENST00000555259 GTF3C2Q8WUA4 911 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-215ENST00000555259 BADQ92934 168 aa11.97□□□□□ -0.49
SCFD1-215ENST00000555259 EDC3Q96F86 508 aaKnown RBP11.97□□□□□ -0.49
SCFD1-215ENST00000555259 PRDM5Q9NQX1 630 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-215ENST00000555259 TMEM265A0A087WTH1 108 aa11.96□□□□□ -0.49
SCFD1-215ENST00000555259 MAP4K4O95819 1239 aaPredicted RBP11.96□□□□□ -0.49
SCFD1-215ENST00000555259 CNGA1P29973 690 aa11.96□□□□□ -0.49
SCFD1-215ENST00000555259 JAG1P78504 1218 aa11.96□□□□□ -0.49
SCFD1-215ENST00000555259 ERICH6Q7L0X2 663 aa11.96□□□□□ -0.49
SCFD1-215ENST00000555259 CWC22Q9HCG8 908 aaKnown RBP11.96□□□□□ -0.49
SCFD1-215ENST00000555259 XIRP2A4UGR9 3374 aa11.96□□□□□ -0.49
SCFD1-215ENST00000555259 RLFQ13129 1914 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L10C9JJH3 530 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 PLA2G5P39877 138 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 IL15P40933 162 aaPredicted RBP11.96□□□□□ -0.5
SCFD1-215ENST00000555259 GJC2Q5T442 439 aaPredicted RBP11.96□□□□□ -0.5
SCFD1-215ENST00000555259 SLC39A5Q6ZMH5 540 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 PI4KBQ9UBF8 816 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 NDUFB9Q9Y6M9 179 aa11.96□□□□□ -0.5
SCFD1-215ENST00000555259 PTPRCP08575 1304 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 GLRX3O76003 335 aaKnown RBP11.95□□□□□ -0.5
SCFD1-215ENST00000555259 SNX17Q15036 470 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 SHROOM1Q2M3G4 852 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-215ENST00000555259 TRIM60Q495X7 471 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 MRPL50Q8N5N7 158 aaKnown RBP11.95□□□□□ -0.5
SCFD1-215ENST00000555259 TRPV1Q8NER1 839 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 PDLIM7Q9NR12 457 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 NCOR1O75376 2440 aa11.95□□□□□ -0.5
SCFD1-215ENST00000555259 TRIM43BA6NCK2 446 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 SLC15A5A6NIM6 579 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 CNMDO75829 334 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 LDHCP07864 332 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 HOXC6P09630 235 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 PTPREP23469 700 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 CYP2C19P33261 490 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 TIMM10P62072 90 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 CCNA1P78396 465 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 GSTO1P78417 241 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 ATP2B2Q01814 1243 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 GRIN2CQ14957 1233 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 SH3RF1Q7Z6J0 888 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 TEX11Q8IYF3 940 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 ARRDC4Q8NCT1 418 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 TRIM43Q96BQ3 446 aaPredicted RBP11.94□□□□□ -0.5
SCFD1-215ENST00000555259 NSUN4Q96CB9 384 aaKnown RBP11.94□□□□□ -0.5
SCFD1-215ENST00000555259 DNAJC18Q9H819 358 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 EMILIN3Q9NT22 766 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 RABGAP1Q9Y3P9 1069 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 SIPA1L1O43166 1804 aa11.94□□□□□ -0.5
SCFD1-215ENST00000555259 KBTBD13C9JR72 458 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 IGHA2P01877 340 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 CYBAP13498 195 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 WDR78Q5VTH9 848 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 NPLOC4Q8TAT6 608 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 FAM122AQ96E09 287 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 RNPC3Q96LT9 517 aaKnown RBP11.93□□□□□ -0.5
SCFD1-215ENST00000555259 DHX36Q9H2U1 1008 aaKnown RBP11.93□□□□□ -0.5
SCFD1-215ENST00000555259 ZBTB21Q9ULJ3 1066 aa11.93□□□□□ -0.5
SCFD1-215ENST00000555259 PA2G4Q9UQ80 394 aaKnown RBP11.93□□□□□ -0.5
SCFD1-215ENST00000555259 GDF11O95390 407 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 GRB14Q14449 540 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 TBC1D9Q6ZT07 1266 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 METTL16Q86W50 562 aaKnown RBP11.92□□□□□ -0.5
SCFD1-215ENST00000555259 SH3RF3Q8TEJ3 882 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-215ENST00000555259 XAGE2Q96GT9 111 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 GINM1Q9NU53 330 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 HMG20BQ9P0W2 317 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 BDP1A6H8Y1 2624 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 A0A1B0GUL7 405 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms