RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	ZBTB43	O43298	467 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	KCNA6	P17658	529 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	STIM1	Q13586	685 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	AKAP4	Q5JQC9	854 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CCDC148	Q8NFR7	591 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	PPM1E	Q8WY54	764 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	DDX17	Q92841	729 aa	Known RBP	10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	TUBE1	Q9UJT0	475 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	MYO6	Q9UM54	1294 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022		A0A087X0B3	334 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	ESYT3	A0FGR9	886 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	APBA1	Q02410	837 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	PTPA	Q15257	358 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CHRNA2	Q15822	529 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	BPIFA3	Q9BQP9	254 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	METTL22	Q9BUU2	404 aa	Predicted RBP	10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	FAM208A	Q9UK61	1670 aa	Known RBP	10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	PXDN	Q92626	1479 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	EXOC5	O00471	708 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	GYPC	P04921	128 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	GUCY2C	P25092	1073 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	KLK7	P49862	253 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CCDC122	Q5T0U0	273 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	RESP18	Q5W5W9	173 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	TADA2B	Q86TJ2	420 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CD248	Q9HCU0	757 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CEP126	Q9P2H0	1117 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	FAM169A	Q9Y6X4	670 aa		10.06	□□□□□ -0.8
SYNE2-217	ENST00000555022	CLTC	Q00610	1675 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	GOLGA6C	A6NDK9	693 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	WNT7A	O00755	349 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	FOXP2	O15409	715 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	GOLGA6D	P0CG33	693 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	CORO7	P57737	925 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	CT47A1	Q5JQC4	288 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	ZNF790	Q6PG37	636 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	CPLX2	Q6PUV4	134 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	CABLES1	Q8TDN4	633 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	MYCBP	Q99417	103 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	GOLGA6A	Q9NYA3	693 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	HDAC5	Q9UQL6	1122 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	AXIN2	Q9Y2T1	843 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	EIF4E1B	A6NMX2	242 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	NAP1L1	P55209	391 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	UBXN1	Q04323	297 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	TBX2	Q13207	712 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	MIGA1	Q8NAN2	632 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	FAM89A	Q96GI7	184 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	COPRS	Q9NQ92	184 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	ARAP3	Q8WWN8	1544 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	PRKAB2	O43741	272 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	MFAP3L	O75121	409 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	SYF2	O95926	243 aa	Known RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	SAFB	Q15424	915 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	APOA5	Q6Q788	366 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	ATG9A	Q7Z3C6	839 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	XAGE2	Q96GT9	111 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	DSCC1	Q9BVC3	393 aa		10.05	□□□□□ -0.8
SYNE2-217	ENST00000555022	GOLGA6L9	A6NEM1	432 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	HPD	P32754	393 aa	Predicted RBP	10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	TOB1	P50616	345 aa	Predicted RBP	10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	GUCY2F	P51841	1108 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	FILIP1L	Q4L180	1135 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	KRT26	Q7Z3Y9	468 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	CEP57	Q86XR8	500 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	FAM76A	Q8TAV0	307 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	FAM71B	Q8TC56	605 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	UIMC1	Q96RL1	719 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	NBPF3	Q9H094	633 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	KCND1	Q9NSA2	647 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	GDA	Q9Y2T3	454 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	SLC12A7	Q9Y666	1083 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	SRCAP	Q6ZRS2	3230 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	DIP2C	Q9Y2E4	1556 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	USP31	Q70CQ4	1352 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	MINDY4B	A8MYZ0	360 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	NCK2	O43639	380 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	SSRP1	Q08945	709 aa	Known RBP	10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	EARS2	Q5JPH6	523 aa	Known RBP	10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	HELLS	Q9NRZ9	838 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	ANGEL1	Q9UNK9	670 aa	Known RBP	10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	UBN2	Q6ZU65	1347 aa		10.04	□□□□□ -0.8
SYNE2-217	ENST00000555022	PDE2A	O00408	941 aa	Predicted RBP	10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	EBAG9	O00559	213 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	ATP8B1	O43520	1251 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	PPFIA4	O75335	1185 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	IFT81	Q8WYA0	676 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	MAP3K14	Q99558	947 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	SELENOO	Q9BVL4	669 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	HPCAL4	Q9UM19	191 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	HPSE	Q9Y251	543 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	GOLGA6B	A6NDN3	693 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	INPP5B	P32019	993 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	NR1I3	Q14994	352 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	KRT31	Q15323	416 aa		10.03	□□□□□ -0.8
SYNE2-217	ENST00000555022	ARL8A	Q96BM9	186 aa		10.03	□□□□□ -0.8

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