RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 OTUD7BQ6GQQ9 843 aa10.38□□□□□ -0.75
TDP1-210ENST00000554976 CCDC144CPQ8IYA2 1237 aa10.38□□□□□ -0.75
TDP1-210ENST00000554976 ZDHHC15Q96MV8 337 aa10.38□□□□□ -0.75
TDP1-210ENST00000554976 FTOQ9C0B1 505 aaKnown RBP eCLIP10.38□□□□□ -0.75
TDP1-210ENST00000554976 DBNDD1Q9H9R9 158 aa10.38□□□□□ -0.75
TDP1-210ENST00000554976 USP5P45974 858 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 HDLBPQ00341 1268 aaKnown RBP10.37□□□□□ -0.75
TDP1-210ENST00000554976 RTN1Q16799 776 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 GRIPAP1Q4V328 841 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 NFXL1Q6ZNB6 911 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 TEX11Q8IYF3 940 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.37□□□□□ -0.75
TDP1-210ENST00000554976 SCAND2PQ9GZW5 306 aaPredicted RBP10.37□□□□□ -0.75
TDP1-210ENST00000554976 ATAD5Q96QE3 1844 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 H3BQV1 296 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 NASPP49321 788 aaPredicted RBP10.37□□□□□ -0.75
TDP1-210ENST00000554976 PDE4BQ07343 736 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 AOC3Q16853 763 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 SLC35G1Q2M3R5 365 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 IFFO2Q5TF58 517 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 RBM43Q6ZSC3 357 aaKnown RBP10.37□□□□□ -0.75
TDP1-210ENST00000554976 SLC44A5Q8NCS7 719 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 C8orf76Q96K31 380 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 USP28Q96RU2 1077 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 UBAC1Q9BSL1 405 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 RNF26Q9BY78 433 aaPredicted RBP10.37□□□□□ -0.75
TDP1-210ENST00000554976 RTEL1Q9NZ71 1219 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 MYO3BQ8WXR4 1341 aa10.37□□□□□ -0.75
TDP1-210ENST00000554976 NPY5RQ15761 445 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CSPP1Q1MSJ5 1256 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 IFIT1BQ5T764 474 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 KRT40Q6A162 431 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CDC42EP5Q6NZY7 148 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 LRSAM1Q6UWE0 723 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 TMTC3Q6ZXV5 915 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 DGKHQ86XP1 1220 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 ALG1Q9BT22 464 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 NAP1L2Q9ULW6 460 aaPredicted RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 PCDHAC2Q9Y5I4 1007 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 ERICH2A1L162 156 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 PRPF3O43395 683 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 PLEKHA8P1O95397 391 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 SLC3A2P08195 630 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 DPEP1P16444 411 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 IARSP41252 1262 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 CDK8P49336 464 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 GUCY1B3Q02153 619 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 BRAPQ7Z569 592 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 POLR3EQ9NVU0 708 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 RBM28Q9NW13 759 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 SAP30BPQ9UHR5 308 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 TTF2Q9UNY4 1162 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 GOLGA6L3A6NEY3 463 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CPLX1O14810 134 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 NPM3O75607 178 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 MMP1P03956 469 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CALM1P0DP23 149 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CALM2P0DP24 149 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 CALM3P0DP25 149 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 FOSBP53539 338 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 SSRP1Q08945 709 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 GRPEL1Q9HAV7 217 aa10.36□□□□□ -0.75
TDP1-210ENST00000554976 TFIP11Q9UBB9 837 aaKnown RBP10.36□□□□□ -0.75
TDP1-210ENST00000554976 RRP9O43818 475 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 DEXIO95424 95 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 CRKP46108 304 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 SF3B2Q13435 895 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 MYSM1Q5VVJ2 828 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 IQCA1Q86XH1 822 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 SPATA32Q96LK8 384 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 GMLQ99445 158 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 IDI2Q9BXS1 227 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 VPS33BQ9H267 617 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 MAD2L2Q9UI95 211 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 ATRNL1Q5VV63 1379 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 LIG1P18858 919 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 TFAP4Q01664 338 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 GRM4Q14833 912 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 PTPAQ15257 358 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 CCDC183Q5T5S1 534 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 METTL16Q86W50 562 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 CMTR1Q8N1G2 835 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 SRBD1Q8N5C6 995 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 SUPT20HQ8NEM7 779 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 NEDD1Q8NHV4 660 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 TNFRSF25Q93038 417 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 NOL10Q9BSC4 688 aaKnown RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 PHF20Q9BVI0 1012 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 OSBPL5Q9H0X9 879 aaPredicted RBP10.35□□□□□ -0.75
TDP1-210ENST00000554976 TOMM22Q9NS69 142 aa10.35□□□□□ -0.75
TDP1-210ENST00000554976 USP17L3A6NCW0 530 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 USP17L4A6NCW7 530 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 C21orf2O43822 256 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 MRE11P49959 708 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 USP17L1Q7RTZ2 530 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 TTLL6Q8N841 843 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 LINC00301Q8NCQ3 95 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 SLC26A6Q9BXS9 759 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 EHD4Q9H223 541 aa10.34□□□□□ -0.75
TDP1-210ENST00000554976 GOLPH3LQ9H4A5 285 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms