RNA–Protein interactions for RNA: ENST00000554819.5

SCFD1-214, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 608 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-214ENST00000554819 UBP1Q9NZI7 540 aa6.65□□□□□ -1.34
SCFD1-214ENST00000554819 GTF2IRD1Q9UHL9 959 aa6.65□□□□□ -1.34
SCFD1-214ENST00000554819 POLR3KQ9Y2Y1 108 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-214ENST00000554819 CORINQ9Y5Q5 1042 aa6.65□□□□□ -1.34
SCFD1-214ENST00000554819 SCO2A0A1W2PP80 73 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 GRIN3BO60391 1043 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 LEFTY1O75610 366 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 HTR3BO95264 441 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 MCM4P33991 863 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 ZNF165P49910 485 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 LRP8Q14114 963 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 SEZ6Q53EL9 994 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 PRAMEF13Q5VWM6 474 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 C9orf131Q5VYM1 1079 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 ZNF746Q6NUN9 644 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-214ENST00000554819 ARHGAP27Q6ZUM4 889 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 SLITRK4Q8IW52 837 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 REXO1Q8N1G1 1221 aaKnown RBP6.64□□□□□ -1.35
SCFD1-214ENST00000554819 ACSF2Q96CM8 615 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-214ENST00000554819 EAF1Q96JC9 268 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-214ENST00000554819 SPATA32Q96LK8 384 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 LRRC4CQ9HCJ2 640 aa6.64□□□□□ -1.35
SCFD1-214ENST00000554819 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-214ENST00000554819 TCF3P15923 654 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 SSTR4P31391 388 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 CRKP46108 304 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 CD97P48960 835 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 FAM13CQ8NE31 585 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 MIPEPQ99797 713 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 TGIF2Q9GZN2 237 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 MKNK2Q9HBH9 465 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 REV1Q9UBZ9 1251 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 PCDHB14Q9Y5E9 798 aa6.63□□□□□ -1.35
SCFD1-214ENST00000554819 IGF2BP3O00425 579 aaKnown RBP eCLIP6.62□□□□□ -1.35
SCFD1-214ENST00000554819 SLITRK5O94991 958 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 ATE1O95260 518 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 XP32Q5T750 250 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 LETMD1Q6P1Q0 360 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 SLFN12Q8IYM2 578 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 EHMT1Q9H9B1 1298 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 PCMTD2Q9NV79 361 aa6.62□□□□□ -1.35
SCFD1-214ENST00000554819 KIAA1324LA8MWY0 1029 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-214ENST00000554819 HYAL3O43820 417 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-214ENST00000554819 EOMESO95936 686 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 CYP7A1P22680 504 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 HOXA10P31260 410 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-214ENST00000554819 ARTNQ5T4W7 220 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 GK5Q6ZS86 529 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 XAGE3Q8WTP9 111 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 COX4I2Q96KJ9 171 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 ZFP64Q9NPA5 681 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 PRDM5Q9NQX1 630 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-214ENST00000554819 TPX2Q9ULW0 747 aaKnown RBP6.61□□□□□ -1.35
SCFD1-214ENST00000554819 MAPK8IP1Q9UQF2 711 aa6.61□□□□□ -1.35
SCFD1-214ENST00000554819 UPK3BL1B0FP48 263 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 UPK3BL2E5RIL1 263 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 MED26O95402 600 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 ERCC5P28715 1186 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 ETV3P41162 512 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 PAK2Q13177 524 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 COL9A2Q14055 689 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 LRRFIP1Q32MZ4 808 aaKnown RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 FAM214BQ7L5A3 538 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 DTX1Q86Y01 620 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 HEXIM2Q96MH2 286 aaKnown RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 DPH2Q9BQC3 489 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 CCSER2Q9H7U1 834 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 BSDC1Q9NW68 430 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 GMIPQ9P107 970 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 ZC3H7BQ9UGR2 993 aaKnown RBP6.6□□□□□ -1.35
SCFD1-214ENST00000554819 KLHL3Q9UH77 587 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 CEP131Q9UPN4 1083 aa6.6□□□□□ -1.35
SCFD1-214ENST00000554819 SLC22A31A6NKX4 558 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 GNAT3A8MTJ3 354 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 CHURC1-FNTBB4DL54 471 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 IMPDH2P12268 514 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 CLCQ05315 142 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 MSMPQ1L6U9 139 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 SFRP5Q5T4F7 317 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 RIN3Q8TB24 985 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 NETO1Q8TDF5 533 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 CYB5D2Q8WUJ1 264 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 CCDC74BQ96LY2 380 aa6.59□□□□□ -1.35
SCFD1-214ENST00000554819 CEACAM5P06731 702 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 SPINK2P20155 84 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 OXCT1P55809 520 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 RAD51AP2Q09MP3 1159 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 IFI16Q16666 785 aaKnown RBP6.58□□□□□ -1.36
SCFD1-214ENST00000554819 CDH24Q86UP0 819 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 PHACTR4Q8IZ21 702 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 RASGRP4Q8TDF6 673 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 GPRASP2Q96D09 838 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 MISP3Q96FF7 219 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 INPP5FQ9Y2H2 1132 aa6.58□□□□□ -1.36
SCFD1-214ENST00000554819 TMEM265A0A087WTH1 108 aa6.57□□□□□ -1.36
SCFD1-214ENST00000554819 RAG1P15918 1043 aa6.57□□□□□ -1.36
SCFD1-214ENST00000554819 GBP1P32455 592 aa6.57□□□□□ -1.36
SCFD1-214ENST00000554819 KIR3DL1P43629 444 aa6.57□□□□□ -1.36
SCFD1-214ENST00000554819 GJA8P48165 433 aa6.57□□□□□ -1.36
SCFD1-214ENST00000554819 TNNI2P48788 182 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms