RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 BAG3O95817 575 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 MS4A1P11836 297 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 PDE3AQ14432 1141 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 NKX2-3Q8TAU0 364 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 PANK1Q8TE04 598 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 PXYLP1Q8TE99 480 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 NOL10Q9BSC4 688 aaKnown RBP12.92□□□□□ -0.34
SHMT2-215ENST00000554656 TBC1D2Q9BYX2 928 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 DHX36Q9H2U1 1008 aaKnown RBP12.92□□□□□ -0.34
SHMT2-215ENST00000554656 ANTXR1Q9H6X2 564 aa12.92□□□□□ -0.34
SHMT2-215ENST00000554656 FARP2O94887 1054 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-215ENST00000554656 SGPL1O95470 568 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 CYP7A1P22680 504 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 GCLCP48506 637 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-215ENST00000554656 POTEEQ6S8J3 1075 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 TXNRD2Q9NNW7 524 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 PAK6Q9NQU5 681 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-215ENST00000554656 MORF4L1Q9UBU8 362 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 GJD2Q9UKL4 321 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 ZBTB21Q9ULJ3 1066 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 EXOC6BQ9Y2D4 811 aa12.91□□□□□ -0.34
SHMT2-215ENST00000554656 FRMPD3Q5JV73 1810 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 SZT2Q5T011 3432 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 IDH1O75874 414 aaKnown RBP12.9□□□□□ -0.34
SHMT2-215ENST00000554656 ASNSP08243 561 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 BACE1P56817 501 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 IRX6P78412 446 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-215ENST00000554656 TRIM32Q13049 653 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 MIGA1Q8NAN2 632 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 COA7Q96BR5 231 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 DEFB118Q96PH6 123 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 AS3MTQ9HBK9 375 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 TAOK2Q9UL54 1235 aa12.9□□□□□ -0.34
SHMT2-215ENST00000554656 HOXA7P31268 230 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-215ENST00000554656 PABPC4Q13310 644 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-215ENST00000554656 AAMPQ13685 434 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 CHRDL2Q6WN34 429 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 FOXP4Q8IVH2 680 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-215ENST00000554656 CRACR2BQ8N4Y2 399 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-215ENST00000554656 MAGEB6Q8N7X4 407 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 DPF3Q92784 378 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 P2RX7Q99572 595 aaKnown RBP12.89□□□□□ -0.35
SHMT2-215ENST00000554656 CRISPLD2Q9H0B8 497 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 PRO3102Q9H379 93 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 MYH7P12883 1935 aa12.89□□□□□ -0.35
SHMT2-215ENST00000554656 MYH8P13535 1937 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 BAZ2AQ9UIF9 1905 aaKnown RBP12.88□□□□□ -0.35
SHMT2-215ENST00000554656 IGSF3O75054 1194 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 GH2P01242 217 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 HERVK_113P62684 666 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 IRX3P78415 501 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-215ENST00000554656 EVX2Q03828 476 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 AACSQ86V21 672 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 DIS3LQ8TF46 1054 aaKnown RBP12.88□□□□□ -0.35
SHMT2-215ENST00000554656 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.88□□□□□ -0.356e-7■□□□□ 9.5
SHMT2-215ENST00000554656 IL1RAPL2Q9NP60 686 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 EMILIN3Q9NT22 766 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 RBM27Q9P2N5 1060 aaKnown RBP12.88□□□□□ -0.35
SHMT2-215ENST00000554656 RLFQ13129 1914 aa12.88□□□□□ -0.35
SHMT2-215ENST00000554656 USP17L10C9JJH3 530 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 HMGCRP04035 888 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 TATDN1Q6P1N9 297 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 SIRT2Q8IXJ6 389 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 TRIB2Q92519 343 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 RIOK1Q9BRS2 568 aaKnown RBP12.87□□□□□ -0.35
SHMT2-215ENST00000554656 HTATIP2Q9BUP3 242 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 GINM1Q9NU53 330 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 TMOD4Q9NZQ9 345 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 RBPJLQ9UBG7 517 aa12.87□□□□□ -0.35
SHMT2-215ENST00000554656 PARP14Q460N5 1801 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 A0A0G2JMZ2 1700 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 C19orf81C9J6K1 198 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 TFRCP02786 760 aaKnown RBP12.86□□□□□ -0.35
SHMT2-215ENST00000554656 HLA-DOAP06340 250 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 USP5P45974 858 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-215ENST00000554656 Q3C1V9 767 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 RHPN1Q8TCX5 695 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 TRIM34Q9BYJ4 488 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 EHD4Q9H223 541 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 PORCNQ9H237 461 aa12.86□□□□□ -0.35
SHMT2-215ENST00000554656 CNMDO75829 334 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 GUCY1A2P33402 732 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 SHMT1P34896 483 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 PLCD1P51178 756 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 ERVK-9P63128 1117 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 ERVK-24P63145 666 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 ZYXQ15942 572 aaKnown RBP12.85□□□□□ -0.35
SHMT2-215ENST00000554656 MAP3K21Q5TCX8 1036 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 ERC1Q8IUD2 1116 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 ACER1Q8TDN7 264 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 USP6NLQ92738 828 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 EDC3Q96F86 508 aaKnown RBP12.85□□□□□ -0.35
SHMT2-215ENST00000554656 PAWRQ96IZ0 340 aaKnown RBP12.85□□□□□ -0.35
SHMT2-215ENST00000554656 C12orf42Q96LP6 360 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 SERPINB13Q9UIV8 391 aa12.85□□□□□ -0.35
SHMT2-215ENST00000554656 TCRBV5S4A2TA0A5A2 114 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 PDE6AP16499 860 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 CYP2B6P20813 491 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 GABPAQ06546 454 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms