RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 GPR182O15218 404 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 EIF2AK2P19525 551 aaKnown RBP7.52□□□□□ -1.21
VPS33B-203ENST00000554264 HMGB2P26583 209 aaKnown RBP7.52□□□□□ -1.21
VPS33B-203ENST00000554264 KCNMA1Q12791 1236 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 ELMSAN1Q6PJG2 1045 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 CEP120Q8N960 986 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 RBCK1Q9BYM8 510 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 SMG9Q9H0W8 520 aaKnown RBP7.52□□□□□ -1.21
VPS33B-203ENST00000554264 SHANK3Q9BYB0 1731 aa7.52□□□□□ -1.21
VPS33B-203ENST00000554264 BTAF1O14981 1849 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 NDUFB5O43674 189 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 TRPA1O75762 1119 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 RGS9O75916 674 aaPredicted RBP7.51□□□□□ -1.21
VPS33B-203ENST00000554264 HSPA6P17066 643 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 CES1P23141 567 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 ATP11AP98196 1134 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 EHHADHQ08426 723 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 ORC1Q13415 861 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 USPL1Q5W0Q7 1092 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 TMC7Q7Z402 723 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 KCTD17Q8N5Z5 321 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 TTC16Q8NEE8 873 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 EXOC6Q8TAG9 804 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 ANKRD24Q8TF21 1146 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 PLD4Q96BZ4 506 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 PLVAPQ9BX97 442 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 ZFYVE28Q9HCC9 887 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 FRRS1LQ9P0K9 344 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 QSER1Q2KHR3 1735 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 ATP10DQ9P241 1426 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 RGPD5Q99666 1765 aa7.51□□□□□ -1.21
VPS33B-203ENST00000554264 COL24A1Q17RW2 1714 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 GNB5O14775 395 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 LILRB5O75023 590 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 POLR3DP05423 398 aaPredicted RBP7.5□□□□□ -1.21
VPS33B-203ENST00000554264 NEFMP07197 916 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 YBX3P16989 372 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS33B-203ENST00000554264 RASSF7Q02833 373 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 HYAL2Q12891 473 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 WDR43Q15061 677 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS33B-203ENST00000554264 DDX54Q8TDD1 881 aaKnown RBP7.5□□□□□ -1.21
VPS33B-203ENST00000554264 TTC9Q92623 222 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 CITED4Q96RK1 184 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 TESK2Q96S53 571 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 NIF3L1Q9GZT8 377 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 KDM2BQ8NHM5 1336 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 MAPK8IP3Q9UPT6 1336 aa7.5□□□□□ -1.21
VPS33B-203ENST00000554264 ANKRD36BQ8N2N9 1353 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 PHF20L1A8MW92 1017 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 NFKBIEO00221 500 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 PHACTR2O75167 634 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 PODNQ7Z5L7 613 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 NCAPG2Q86XI2 1143 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS33B-203ENST00000554264 SNX29Q8TEQ0 813 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 SYTL4Q96C24 671 aaPredicted RBP7.49□□□□□ -1.21
VPS33B-203ENST00000554264 HHIPQ96QV1 700 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 RASSF4Q9H2L5 321 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 DCTN4Q9UJW0 460 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 CCNL1Q9UK58 526 aaPredicted RBP7.49□□□□□ -1.21
VPS33B-203ENST00000554264 CD2APQ9Y5K6 639 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 CGNL1Q0VF96 1302 aa7.49□□□□□ -1.21
VPS33B-203ENST00000554264 SBNO2Q9Y2G9 1366 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 USP54Q70EL1 1684 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 GHRHP01286 108 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 PEAR1Q5VY43 1037 aaPredicted RBP7.48□□□□□ -1.21
VPS33B-203ENST00000554264 HDGFL2Q7Z4V5 671 aaPredicted RBP7.48□□□□□ -1.21
VPS33B-203ENST00000554264 NME9Q86XW9 330 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 COL23A1Q86Y22 540 aaPredicted RBP7.48□□□□□ -1.21
VPS33B-203ENST00000554264 HOMEZQ8IX15 550 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 FLAD1Q8NFF5 587 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 LATS2Q9NRM7 1088 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 TRIM33Q9UPN9 1127 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 KNSTRNQ9Y448 316 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 ZNF521Q96K83 1311 aa7.48□□□□□ -1.21
VPS33B-203ENST00000554264 ADCY9O60503 1353 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 PATL2C9JE40 543 aaKnown RBP7.47□□□□□ -1.21
VPS33B-203ENST00000554264 FAM229AH3BQW9 127 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 MAPK1P28482 360 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 PDE3AQ14432 1141 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 DSC3Q14574 896 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 DMRTC2Q8IXT2 367 aaPredicted RBP7.47□□□□□ -1.21
VPS33B-203ENST00000554264 IP6K1Q92551 441 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 DCAF5Q96JK2 942 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 POP1Q99575 1024 aaKnown RBP7.47□□□□□ -1.21
VPS33B-203ENST00000554264 PBX4Q9BYU1 374 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 DZANK1Q9NVP4 752 aa7.47□□□□□ -1.21
VPS33B-203ENST00000554264 NSD2O96028 1365 aa7.46□□□□□ -1.21
VPS33B-203ENST00000554264 EDC4Q6P2E9 1401 aaKnown RBP7.46□□□□□ -1.21
VPS33B-203ENST00000554264 E9PSI1 815 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 ITGB2P05107 769 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 BECN1Q14457 450 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 MSL1Q68DK7 614 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 GDF6Q6KF10 455 aaPredicted RBP7.46□□□□□ -1.22
VPS33B-203ENST00000554264 SND1Q7KZF4 910 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS33B-203ENST00000554264 ZCRB1Q8TBF4 217 aaKnown RBP7.46□□□□□ -1.22
VPS33B-203ENST00000554264 PMEPA1Q969W9 287 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 PANK3Q9H999 370 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 MON2Q7Z3U7 1717 aa7.46□□□□□ -1.22
VPS33B-203ENST00000554264 FAM208AQ9UK61 1670 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms