RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 NBPF12Q5TAG4 269 aaPredicted RBP9.32□□□□□ -0.92
ATXN3-219ENST00000553488 G2E3Q7L622 706 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 EPS8L1Q8TE68 723 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 PRMT6Q96LA8 375 aaPredicted RBP9.32□□□□□ -0.92
ATXN3-219ENST00000553488 EFCC1Q9HA90 598 aa9.32□□□□□ -0.92
ATXN3-219ENST00000553488 MYH13Q9UKX3 1938 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 IREB2P48200 963 aaKnown RBP9.31□□□□□ -0.92
ATXN3-219ENST00000553488 SP3Q02447 781 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 CALD1Q05682 793 aaKnown RBP9.31□□□□□ -0.92
ATXN3-219ENST00000553488 NEXNQ0ZGT2 675 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 BPHLQ86WA6 291 aaPredicted RBP9.31□□□□□ -0.92
ATXN3-219ENST00000553488 ANKRD13AQ8IZ07 590 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 BRI3BPQ8WY22 251 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 TRIM34Q9BYJ4 488 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 FKBPLQ9UIM3 349 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 MGAMO43451 1857 aa9.31□□□□□ -0.92
ATXN3-219ENST00000553488 F8W031 263 aaPredicted RBP9.3□□□□□ -0.92
ATXN3-219ENST00000553488 TAF5LO75529 589 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 KCNJ4P48050 445 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 RASA3Q14644 834 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 SUPT20HL1Q3ZLR7 823 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 OTUD7BQ6GQQ9 843 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 PDXDC2PQ6P474 469 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 TRMT44Q8IYL2 757 aaKnown RBP9.3□□□□□ -0.92
ATXN3-219ENST00000553488 TSR2Q969E8 191 aaKnown RBP9.3□□□□□ -0.92
ATXN3-219ENST00000553488 OPTNQ96CV9 577 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 TEPSINQ96N21 525 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 MPHOSPH8Q99549 860 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 OCSTAMPQ9BR26 566 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 ELP3Q9H9T3 547 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 VEZTQ9HBM0 779 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 PTCH2Q9Y6C5 1203 aa9.3□□□□□ -0.92
ATXN3-219ENST00000553488 LAMA2P24043 3122 aaKnown RBP9.29□□□□□ -0.92
ATXN3-219ENST00000553488 MYO1BO43795 1136 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.29□□□□□ -0.92
ATXN3-219ENST00000553488 FAM174AQ8TBP5 190 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 CHMP4AQ9BY43 222 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 DACH1Q9UI36 760 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 JAG2Q9Y219 1238 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 UNC80Q8N2C7 3258 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 PTPRFP10586 1907 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 ALPK3Q96L96 1907 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 FAM205AQ6ZU69 1335 aa9.29□□□□□ -0.92
ATXN3-219ENST00000553488 AXIN1O15169 862 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 FOXO4P98177 505 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 FLIIQ13045 1269 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 VGLL4Q14135 290 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 TAF1CQ15572 869 aaPredicted RBP9.28□□□□□ -0.92
ATXN3-219ENST00000553488 SLC9C1Q4G0N8 1177 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 ZNF804AQ7Z570 1209 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 FAM43AQ8N2R8 423 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 BANK1Q8NDB2 785 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.28□□□□□ -0.92
ATXN3-219ENST00000553488 SHISA4Q96DD7 197 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 STK31Q9BXU1 1019 aa9.28□□□□□ -0.92
ATXN3-219ENST00000553488 ZNF70Q9UC06 446 aaPredicted RBP9.28□□□□□ -0.92
ATXN3-219ENST00000553488 CCL15-CCL14A0A0B4J2E2 113 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 ANKRD18BA2A2Z9 1011 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 DDX10Q13206 875 aaKnown RBP9.27□□□□□ -0.93
ATXN3-219ENST00000553488 TNFAIP1Q13829 316 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 CCL15Q16663 113 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 TWISTNBQ3B726 338 aaPredicted RBP9.27□□□□□ -0.93
ATXN3-219ENST00000553488 LINS1Q8NG48 757 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 DNAAF4Q8WXU2 420 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 ARHGAP39Q9C0H5 1083 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 MYH16Q9H6N6 1097 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 PRKRIP1Q9H875 184 aaPredicted RBP9.27□□□□□ -0.93
ATXN3-219ENST00000553488 SERPINA10Q9UK55 444 aa9.27□□□□□ -0.93
ATXN3-219ENST00000553488 DOCK3Q8IZD9 2030 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 H0YGN5 161 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 ADH1CP00326 375 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 GRM5P41594 1212 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 GTF2A2P52657 109 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 EPHA10Q5JZY3 1008 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 MFSD14BQ5SR56 506 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 TDRD7Q8NHU6 1098 aaKnown RBP9.26□□□□□ -0.93
ATXN3-219ENST00000553488 SH3TC2Q8TF17 1288 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 KLF16Q9BXK1 252 aaPredicted RBP9.26□□□□□ -0.93
ATXN3-219ENST00000553488 TMEM39BQ9GZU3 492 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 TDRD3Q9H7E2 651 aaKnown RBP9.26□□□□□ -0.93
ATXN3-219ENST00000553488 ZFYVE28Q9HCC9 887 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 GPSM3Q9Y4H4 160 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 MAP4K5Q9Y4K4 846 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 SNCAIPQ9Y6H5 919 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 DOCK2Q92608 1830 aa9.26□□□□□ -0.93
ATXN3-219ENST00000553488 RPAP1Q9BWH6 1393 aaPredicted RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 AK9Q5TCS8 1911 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 TLR2O60603 784 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 CTGFP29279 349 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 RBM5P52756 815 aaKnown RBP eCLIP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 LACTBP83111 547 aaPredicted RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 IFIT5Q13325 482 aaKnown RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 FKBP5Q13451 457 aaPredicted RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 CCDC27Q2M243 656 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 NBPF11Q86T75 865 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 DZIP1LQ8IYY4 767 aaKnown RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 ZNF594Q96JF6 807 aaPredicted RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 PRO3102Q9H379 93 aa9.25□□□□□ -0.93
ATXN3-219ENST00000553488 ZCCHC17Q9NP64 241 aaKnown RBP9.25□□□□□ -0.93
ATXN3-219ENST00000553488 TTF2Q9UNY4 1162 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms