RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CYP2C8P10632 490 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 GABPAQ06546 454 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 ANKRD45Q5TZF3 282 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 PIP4P2Q8N4L2 257 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 GCC1Q96CN9 775 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 TBC1D2Q9BYX2 928 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 GINM1Q9NU53 330 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 SLC45A1Q9Y2W3 748 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 SHMT1P34896 483 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 SH3D19Q5HYK7 790 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 ZSCAN25Q6NSZ9 544 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 GADL1Q6ZQY3 521 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 PARK7Q99497 189 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 TRIM34Q9BYJ4 488 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 ARHGAP39Q9C0H5 1083 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 EFCC1Q9HA90 598 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 MCM9Q9NXL9 1143 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 CPA4Q9UI42 421 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 ZBTB21Q9ULJ3 1066 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 AGTPBP1Q9UPW5 1226 aa12.4□□□□□ -0.42
CCDC88C-206ENST00000553437 SIPA1L1O43166 1804 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 GLRX3O76003 335 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 IGHDP01880 384 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 POLR3DP05423 398 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 CYP2D6P10635 497 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 BCRP11274 1271 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 MX1P20591 662 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 CTGFP29279 349 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 HMGCS2P54868 508 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 LACTBP83111 547 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 TREML2Q5T2D2 321 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 SMC5Q8IY18 1101 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 PROCA1Q8NCQ7 364 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 OSBP2Q969R2 916 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 STRBPQ96SI9 672 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 AS3MTQ9HBK9 375 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 ATP8A2Q9NTI2 1148 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 STAP2Q9UGK3 403 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 PTPN22Q9Y2R2 807 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 AK9Q5TCS8 1911 aa12.39□□□□□ -0.43
CCDC88C-206ENST00000553437 SMIM22K7EJ46 135 aa12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 ERC2O15083 957 aa12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 RNF113AO15541 343 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 GH2P01242 217 aa12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 GUCY1A2P33402 732 aa12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 BACE1P56817 501 aa12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 CERKLQ49MI3 558 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-206ENST00000553437 USP17L10C9JJH3 530 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 ZFYP08048 801 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 MTMR2Q13614 643 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 ARHGEF6Q15052 776 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 C12orf60Q5U649 245 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 LHX8Q68G74 356 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 APPBP2Q92624 585 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 DYNLL2Q96FJ2 89 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 RWDD1Q9H446 243 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 SLC4A4Q9Y6R1 1079 aa12.37□□□□□ -0.43
CCDC88C-206ENST00000553437 DOCK1Q14185 1865 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 CYP2D7A0A087X1C5 515 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 GSG1L2A8MUP6 293 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 C19orf81C9J6K1 198 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 USP17L12C9JPN9 530 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 USP17L21D6R901 530 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 PDE1AP54750 535 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 ABCB5Q2M3G0 1257 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 CTR9Q6PD62 1173 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 SLC44A5Q8NCS7 719 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 TRIM47Q96LD4 638 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 EMILIN3Q9NT22 766 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 TAOK2Q9UL54 1235 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 FOCADQ5VW36 1801 aa12.36□□□□□ -0.43
CCDC88C-206ENST00000553437 DDX60LQ5H9U9 1706 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 CENPFP49454 3210 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 M0R2C6 588 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 GNRH1P01148 92 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 HOXA7P31268 230 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 PSMC4P43686 418 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 KIF22Q14807 665 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 ACER1Q8TDN7 264 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 ARMC5Q96C12 935 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 SEC62Q99442 399 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 LNPKQ9C0E8 428 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 ASCC2Q9H1I8 757 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 TMOD4Q9NZQ9 345 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 SWAP70Q9UH65 585 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 PTCH2Q9Y6C5 1203 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 CDK5RAP2Q96SN8 1893 aa12.35□□□□□ -0.43
CCDC88C-206ENST00000553437 PHIPQ8WWQ0 1821 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 GPAA1O43292 621 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 ECM2O94769 699 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 OSBPP22059 807 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 CDK8P49336 464 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 SOX10P56693 466 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 NUCB1Q02818 461 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 PABPC4Q13310 644 aaKnown RBP eCLIP12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 SEPT2Q15019 361 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 RAB3GAP1Q15042 981 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms