RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 SOCS4Q8WXH5 440 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 HERVK_113Q902F9 699 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 TRIB2Q92519 343 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 LPAR1Q92633 364 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 PLEKHF1Q96S99 279 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 OCEL1Q9H607 264 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 MSRAQ9UJ68 235 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 AGTPBP1Q9UPW5 1226 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 SUGT1Q9Y2Z0 365 aa6.57□□□□□ -1.36
CKAP4-203ENST00000553039 LAS1LQ9Y4W2 734 aaKnown RBP6.57□□□□□ -1.36
CKAP4-203ENST00000553039 LRRFIP2Q9Y608 721 aaKnown RBP6.57□□□□□ -1.36
CKAP4-203ENST00000553039 PI4K2BG5E9Z4 385 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 H7C1W4 665 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 PLIN1O60240 522 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 ST18O60284 1047 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CTNND1O60716 968 aaKnown RBP6.56□□□□□ -1.36
CKAP4-203ENST00000553039 GLRX3O76003 335 aaKnown RBP6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CSF1RP07333 972 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 RAG1P15918 1043 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CNGA1P29973 690 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 PPP2R1AP30153 589 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 MAPK4P31152 587 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 RGS2P41220 211 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CACNB3P54284 484 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 IFIT5Q13325 482 aaKnown RBP6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CSPP1Q1MSJ5 1256 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 DUSP27Q5VZP5 1158 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 WWC1Q8IX03 1113 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 SCYL3Q8IZE3 742 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 GPRC5AQ8NFJ5 357 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 NECAB3Q96P71 396 aaPredicted RBP6.56□□□□□ -1.36
CKAP4-203ENST00000553039 PRDM12Q9H4Q4 367 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 CDHR5Q9HBB8 845 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 COG5Q9UP83 839 aa6.56□□□□□ -1.36
CKAP4-203ENST00000553039 SPTBN5Q9NRC6 3674 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 MAST3O60307 1309 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 COL3A1P02461 1466 aaPredicted RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 KBTBD13C9JR72 458 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 ERC2O15083 957 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 ALADP13716 330 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 CCND3P30281 292 aaPredicted RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 FPGSQ05932 587 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 UBE4AQ14139 1066 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 RAB30Q15771 203 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 IER5LQ5T953 404 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 C1orf53Q5VUE5 145 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 APOBEC3HQ6NTF7 200 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 KSR2Q6VAB6 950 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 EDC3Q96F86 508 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 UIMC1Q96RL1 719 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 PLA2G12BQ9BX93 195 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 TBC1D2Q9BYX2 928 aa6.55□□□□□ -1.36
CKAP4-203ENST00000553039 PHAXQ9H814 394 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 CWC22Q9HCG8 908 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 DDX20Q9UHI6 824 aaKnown RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 RPAP1Q9BWH6 1393 aaPredicted RBP6.55□□□□□ -1.36
CKAP4-203ENST00000553039 LAMB2P55268 1798 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 TRIM75PA6NK02 468 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 SNAP23O00161 211 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 BRD1O95696 1058 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 ATP2B2Q01814 1243 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 NHLH1Q02575 133 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 KCNA1Q09470 495 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 TCP10Q12799 353 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 CAVIN4Q5BKX8 364 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 TAF7LQ5H9L4 462 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 TMEM92Q6UXU6 159 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 LDHAL6AQ6ZMR3 332 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 UBE3BQ7Z3V4 1068 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 FAM84BQ96KN1 310 aaPredicted RBP6.54□□□□□ -1.36
CKAP4-203ENST00000553039 SLC28A3Q9HAS3 691 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.54□□□□□ -1.36
CKAP4-203ENST00000553039 MORF4L1Q9UBU8 362 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 USTQ9Y2C2 406 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 MAP3K2Q9Y2U5 619 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 LAMB1P07942 1786 aa6.54□□□□□ -1.36
CKAP4-203ENST00000553039 PSME4Q14997 1843 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 TRIM43BA6NCK2 446 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 PHF20L1A8MW92 1017 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 TLL1O43897 1013 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 GCKRQ14397 625 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 KRT24Q2M2I5 525 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 PLEKHH3Q7Z736 793 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 GTF3C2Q8WUA4 911 aaPredicted RBP6.53□□□□□ -1.36
CKAP4-203ENST00000553039 TRIM43Q96BQ3 446 aaPredicted RBP6.53□□□□□ -1.36
CKAP4-203ENST00000553039 CALR3Q96L12 384 aaKnown RBP6.53□□□□□ -1.36
CKAP4-203ENST00000553039 ASCC2Q9H1I8 757 aaPredicted RBP6.53□□□□□ -1.36
CKAP4-203ENST00000553039 MTIF3Q9H2K0 278 aaKnown RBP6.53□□□□□ -1.36
CKAP4-203ENST00000553039 CNNM1Q9NRU3 951 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 TMEM39AQ9NV64 488 aa6.53□□□□□ -1.36
CKAP4-203ENST00000553039 LAMB4A4D0S4 1761 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 PI4KAP2A4QPH2 592 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 C19orf67A6NJJ6 358 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 DCDC2CA8MYV0 355 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 KIAA0355O15063 1070 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 CLTBP09497 229 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 ZEB1P37275 1124 aaPredicted RBP6.52□□□□□ -1.37
CKAP4-203ENST00000553039 TMPOP42166 694 aaKnown RBP6.52□□□□□ -1.37
CKAP4-203ENST00000553039 GYG1P46976 350 aa6.52□□□□□ -1.37
CKAP4-203ENST00000553039 CCNA1P78396 465 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms