RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 FARP2O94887 1054 aaPredicted RBP14□□□□□ -0.17
NEK3-204ENST00000552973 HLA-DOAP06340 250 aa14□□□□□ -0.17
NEK3-204ENST00000552973 FXR1P51114 621 aaKnown RBP eCLIP14□□□□□ -0.17
NEK3-204ENST00000552973 IRX3P78415 501 aaPredicted RBP14□□□□□ -0.17
NEK3-204ENST00000552973 CHRDL2Q6WN34 429 aa14□□□□□ -0.17
NEK3-204ENST00000552973 UBE2Q1Q7Z7E8 422 aa14□□□□□ -0.17
NEK3-204ENST00000552973 ZBTB21Q9ULJ3 1066 aa14□□□□□ -0.17
NEK3-204ENST00000552973 BRCA2P51587 3418 aa14□□□□□ -0.17
NEK3-204ENST00000552973 MKI67P46013 3256 aaKnown RBP14□□□□□ -0.17
NEK3-204ENST00000552973 USP17L10C9JJH3 530 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 CYP2B6P20813 491 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 TRIM32Q13049 653 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 METTL16Q86W50 562 aaKnown RBP13.99□□□□□ -0.17
NEK3-204ENST00000552973 HTATIP2Q9BUP3 242 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 GJD2Q9UKL4 321 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 DOCK1Q14185 1865 aa13.99□□□□□ -0.17
NEK3-204ENST00000552973 GH2P01242 217 aa13.98□□□□□ -0.17
NEK3-204ENST00000552973 MAP3K12Q12852 859 aa13.98□□□□□ -0.17
NEK3-204ENST00000552973 ZYXQ15942 572 aaKnown RBP13.98□□□□□ -0.17
NEK3-204ENST00000552973 Q3C1V9 767 aa13.98□□□□□ -0.17
NEK3-204ENST00000552973 TXNRD2Q9NNW7 524 aa13.98□□□□□ -0.17
NEK3-204ENST00000552973 EMILIN3Q9NT22 766 aa13.98□□□□□ -0.17
NEK3-204ENST00000552973 C19orf81C9J6K1 198 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 HOXA7P31268 230 aaPredicted RBP13.97□□□□□ -0.17
NEK3-204ENST00000552973 HERVK_113P62684 666 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 ERC1Q8IUD2 1116 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 RHPN1Q8TCX5 695 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 PAGR1Q9BTK6 254 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.97□□□□□ -0.171e-5■■■□□ 18
NEK3-204ENST00000552973 PAK6Q9NQU5 681 aaPredicted RBP13.97□□□□□ -0.17
NEK3-204ENST00000552973 RBM27Q9P2N5 1060 aaKnown RBP13.97□□□□□ -0.17
NEK3-204ENST00000552973 MORF4L1Q9UBU8 362 aa13.97□□□□□ -0.17
NEK3-204ENST00000552973 IGSF3O75054 1194 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 PLCD1P51178 756 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 RAB3GAP1Q15042 981 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 USP17L2Q6R6M4 530 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 GPRC5AQ8NFJ5 357 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 DIS3LQ8TF46 1054 aaKnown RBP13.96□□□□□ -0.17
NEK3-204ENST00000552973 PAWRQ96IZ0 340 aaKnown RBP13.96□□□□□ -0.17
NEK3-204ENST00000552973 GINM1Q9NU53 330 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 RBPJLQ9UBG7 517 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 COG6Q9Y2V7 657 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 PHIPQ8WWQ0 1821 aa13.96□□□□□ -0.17
NEK3-204ENST00000552973 ZBED9Q6R2W3 1325 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 HMGCRP04035 888 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 EVX2Q03828 476 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 CERKLQ49MI3 558 aaPredicted RBP13.95□□□□□ -0.18
NEK3-204ENST00000552973 TATDN1Q6P1N9 297 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 POTEEQ6S8J3 1075 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 TTC6Q86TZ1 520 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 CCAR1Q8IX12 1150 aaKnown RBP13.95□□□□□ -0.18
NEK3-204ENST00000552973 TRIB2Q92519 343 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 DNAJC2Q99543 621 aaKnown RBP13.95□□□□□ -0.18
NEK3-204ENST00000552973 FEZ1Q99689 392 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 CRISPLD2Q9H0B8 497 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 SERPINB13Q9UIV8 391 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 NR2E3Q9Y5X4 410 aa13.95□□□□□ -0.18
NEK3-204ENST00000552973 MAGEB6P1A0A0J9YX57 407 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 GOLIM4O00461 696 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 EVI5O60447 810 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 POLR3DP05423 398 aaPredicted RBP13.94□□□□□ -0.18
NEK3-204ENST00000552973 ABCB5Q2M3G0 1257 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 HSP90AB4PQ58FF6 505 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 SLC9C2Q5TAH2 1124 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 CLASRPQ8N2M8 674 aaKnown RBP13.94□□□□□ -0.18
NEK3-204ENST00000552973 ACER1Q8TDN7 264 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 EDC3Q96F86 508 aaKnown RBP13.94□□□□□ -0.18
NEK3-204ENST00000552973 NUDT12Q9BQG2 462 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 RIOK1Q9BRS2 568 aaKnown RBP13.94□□□□□ -0.18
NEK3-204ENST00000552973 PORCNQ9H237 461 aa13.94□□□□□ -0.18
NEK3-204ENST00000552973 HMX1Q9NP08 348 aaPredicted RBP13.94□□□□□ -0.18
NEK3-204ENST00000552973 RPTORQ8N122 1335 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 IFIT2P09913 472 aaKnown RBP13.93□□□□□ -0.18
NEK3-204ENST00000552973 PDE6AP16499 860 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 SHMT1P34896 483 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 ERVK-9P63128 1117 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 ERVK-24P63145 666 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 SLFNL1Q499Z3 407 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 CERS3Q8IU89 383 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 SIRT2Q8IXJ6 389 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 KIF1BPQ96EK5 621 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 EHD4Q9H223 541 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 CABP5Q9NP86 173 aa13.93□□□□□ -0.18
NEK3-204ENST00000552973 ZNF532Q9HCE3 1301 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 PTPRFP10586 1907 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L15C9J2P7 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L13C9JLJ4 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L11C9JVI0 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L18D6R9N7 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L22D6RA61 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L17D6RBQ6 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L19D6RCP7 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L20D6RJB6 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 MS4A1P11836 297 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 PRKAR2AP13861 404 aaKnown RBP13.92□□□□□ -0.18
NEK3-204ENST00000552973 MAPK4P31152 587 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 USP17L24Q0WX57 530 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 PDE3AQ14432 1141 aa13.92□□□□□ -0.18
NEK3-204ENST00000552973 TTF1Q15361 905 aaPredicted RBP13.92□□□□□ -0.18
NEK3-204ENST00000552973 CCL14Q16627 93 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms