RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SCARF1Q14162 830 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 H0YHG0 523 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 CYLC1P35663 651 aaPredicted RBP18.38■□□□□ 0.53
CUX1-213ENST00000549414 PDE4DQ08499 809 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 ZYXQ15942 572 aaKnown RBP18.38■□□□□ 0.53
CUX1-213ENST00000549414 TSPYL1Q9H0U9 437 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 FRMPD1Q5SYB0 1578 aa18.38■□□□□ 0.53
CUX1-213ENST00000549414 DPP8Q6V1X1 898 aaPredicted RBP18.37■□□□□ 0.53
CUX1-213ENST00000549414 LUC7L2Q9Y383 392 aaKnown RBP18.37■□□□□ 0.53
CUX1-213ENST00000549414 SYNRGQ9UMZ2 1314 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 ERLIN2O94905 339 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 MCM6Q14566 821 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 MED23Q9ULK4 1368 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 AKR1B15C9JRZ8 316 aaPredicted RBP18.37■□□□□ 0.53
CUX1-213ENST00000549414 PRPF4BQ13523 1007 aaKnown RBP18.37■□□□□ 0.53
CUX1-213ENST00000549414 MLKLQ8NB16 471 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 PNMA1Q8ND90 353 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 LRRC27Q9C0I9 530 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 CMA1P23946 247 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 RAD51AP2Q09MP3 1159 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 NR5A1Q13285 461 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 EEF2KMTQ96G04 330 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 TAB2Q9NYJ8 693 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 PYCARDQ9ULZ3 195 aa18.37■□□□□ 0.53
CUX1-213ENST00000549414 CD163L1Q9NR16 1453 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 RESTQ13127 1097 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 LONRF3Q496Y0 759 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 C11orf57Q6ZUT1 292 aaPredicted RBP18.36■□□□□ 0.53
CUX1-213ENST00000549414 CAPZA3Q96KX2 299 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 ALS2CR12Q96Q35 445 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 EYA3Q99504 573 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 PKD2L1Q9P0L9 805 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 VWDEQ8N2E2 1590 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 TRIM37O94972 964 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 CCDC42Q96M95 316 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 ZHX1Q9UKY1 873 aaPredicted RBP18.36■□□□□ 0.53
CUX1-213ENST00000549414 ZNF804BA4D1E1 1349 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 CYP2E1P05181 493 aaPredicted RBP18.36■□□□□ 0.53
CUX1-213ENST00000549414 UBE4AQ14139 1066 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 PREX1Q8TCU6 1659 aa18.36■□□□□ 0.53
CUX1-213ENST00000549414 DPCR1Q3MIW9 517 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 DYMQ7RTS9 669 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 TRERF1Q96PN7 1200 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 EHMT1Q9H9B1 1298 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 RTEL1Q9NZ71 1219 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 SCNN1DP51172 638 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 FAM196AQ6ZSG2 479 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 SMIM5Q71RC9 77 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 SETQ01105 290 aaPredicted RBP18.35■□□□□ 0.53
CUX1-213ENST00000549414 HLTFQ14527 1009 aaKnown RBP eCLIP18.35■□□□□ 0.53
CUX1-213ENST00000549414 FOXO4P98177 505 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 KIF23Q02241 960 aaPredicted RBP18.35■□□□□ 0.53
CUX1-213ENST00000549414 TBC1D8BQ0IIM8 1120 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 PLS1Q14651 629 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 FANCLQ9NW38 375 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 ARPP21Q9UBL0 812 aaPredicted RBP18.35■□□□□ 0.53
CUX1-213ENST00000549414 PCDHA5Q9Y5H7 936 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 TAF6LQ9Y6J9 622 aa18.35■□□□□ 0.53
CUX1-213ENST00000549414 MRPL12P52815 198 aaKnown RBP18.34■□□□□ 0.53
CUX1-213ENST00000549414 ADKP55263 362 aaKnown RBP18.34■□□□□ 0.53
CUX1-213ENST00000549414 BMS1Q14692 1282 aaKnown RBP18.34■□□□□ 0.53
CUX1-213ENST00000549414 PPP2R5BQ15173 497 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 NONOQ15233 471 aaKnown RBP eCLIP18.34■□□□□ 0.531e-6■■■□□ 16.7
CUX1-213ENST00000549414 TAX1BP1Q86VP1 789 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 RCOR1Q9UKL0 485 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 ZBTB21Q9ULJ3 1066 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 TTF2Q9UNY4 1162 aaKnown RBP18.34■□□□□ 0.53
CUX1-213ENST00000549414 CTAGE15A4D2H0 777 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 COBLO75128 1261 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 CTAGE8P0CG41 777 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 DOK7Q18PE1 504 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 INF2Q27J81 1249 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 CTAGE6Q86UF2 777 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 CTAGE4Q8IX94 777 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.34■□□□□ 0.538e-7■■■■■ 154.8
CUX1-213ENST00000549414 C1orf167Q5SNV9 1468 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 MACROD2A1Z1Q3 448 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 SV2BQ7L1I2 683 aa18.34■□□□□ 0.53
CUX1-213ENST00000549414 CSGALNACT2Q8N6G5 542 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 GPR101Q96P66 508 aaPredicted RBP18.33■□□□□ 0.53
CUX1-213ENST00000549414 CTAGE9A4FU28 777 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 ERVV-1B6SEH8 477 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 TRAF5O00463 557 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 PLCD1P51178 756 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 PRKG1Q13976 671 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 LINC00301Q8NCQ3 95 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 RASGRP4Q8TDF6 673 aa18.33■□□□□ 0.53
CUX1-213ENST00000549414 BIN2Q9UBW5 565 aaPredicted RBP18.33■□□□□ 0.53
CUX1-213ENST00000549414 CEP170BQ9Y4F5 1589 aaPredicted RBP18.33■□□□□ 0.52
CUX1-213ENST00000549414 RHOXF2BP0C7M4 288 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 GTF2F1P35269 517 aaKnown RBP eCLIP18.33■□□□□ 0.522e-8■■■□□ 18.7
CUX1-213ENST00000549414 SLC39A14Q15043 492 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 MAP9Q49MG5 647 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 RHOXF2Q9BQY4 288 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 ARFGAP3Q9NP61 516 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 SLC1A4P43007 532 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 PAK1Q13153 545 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 CNGA4Q8IV77 575 aa18.33■□□□□ 0.52
CUX1-213ENST00000549414 TNS3Q68CZ2 1445 aa18.32■□□□□ 0.52
CUX1-213ENST00000549414 AGLP35573 1532 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms