RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.57■■□□□ 1.2
CHMP1A-207ENST00000549328 KIAA0100Q14667 2235 aaKnown RBP22.57■■□□□ 1.2
CHMP1A-207ENST00000549328 ZSWIM8A7E2V4 1837 aa22.57■■□□□ 1.2
CHMP1A-207ENST00000549328 SMARCA5O60264 1052 aaPredicted RBP22.56■■□□□ 1.2
CHMP1A-207ENST00000549328 ADD2P35612 726 aa22.56■■□□□ 1.2
CHMP1A-207ENST00000549328 SLC4A8Q2Y0W8 1093 aa22.56■■□□□ 1.2
CHMP1A-207ENST00000549328 TMEM106CQ9BVX2 250 aa22.56■■□□□ 1.2
CHMP1A-207ENST00000549328 LOC285556D6RIA3 1793 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 TNRC18O15417 2968 aaPredicted RBP22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 USP17L10C9JJH3 530 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 GDF11O95390 407 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 GCLCP48506 637 aaPredicted RBP22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 MTMR2Q13614 643 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 ECHDC1Q9NTX5 307 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 TMOD4Q9NZQ9 345 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 PDE4DIPQ5VU43 2346 aa22.55■■□□□ 1.2
CHMP1A-207ENST00000549328 POTEFA5A3E0 1075 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 ECM2O94769 699 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 POLR3DP05423 398 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 PLCD1P51178 756 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 RRP1P56182 461 aaKnown RBP22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 UBE3CQ15386 1083 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 FAM110CQ1W6H9 321 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 TAOK2Q9UL54 1235 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 MYPNQ86TC9 1320 aa22.54■■□□□ 1.2
CHMP1A-207ENST00000549328 GH2P01242 217 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 HOXA7P31268 230 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 SHROOM1Q2M3G4 852 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 CERKLQ49MI3 558 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 ZSCAN25Q6NSZ9 544 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 LCORLQ8N3X6 602 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 RAET1EQ8TD07 263 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 ASCC2Q9H1I8 757 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 DCP1AQ9NPI6 582 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 MCM9Q9NXL9 1143 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 PCDHB15Q9Y5E8 787 aa22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 RBBP6Q7Z6E9 1792 aaKnown RBP22.53■■□□□ 1.2
CHMP1A-207ENST00000549328 GABPAQ06546 454 aa22.52■■□□□ 1.2
CHMP1A-207ENST00000549328 ANKRD13CQ8N6S4 541 aa22.52■■□□□ 1.2
CHMP1A-207ENST00000549328 SH3TC2Q8TF17 1288 aa22.52■■□□□ 1.2
CHMP1A-207ENST00000549328 GPATCH3Q96I76 525 aa22.52■■□□□ 1.2
CHMP1A-207ENST00000549328 ATP8A2Q9NTI2 1148 aa22.52■■□□□ 1.2
CHMP1A-207ENST00000549328 GRK4P32298 578 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 SHMT1P34896 483 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 SDR42E1Q8WUS8 393 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 ARMT1Q9H993 441 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 CABP5Q9NP86 173 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 MGAMO43451 1857 aa22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 DDX60LQ5H9U9 1706 aaKnown RBP22.51■■□□□ 1.19
CHMP1A-207ENST00000549328 MBD4O95243 580 aa22.5■■□□□ 1.19
CHMP1A-207ENST00000549328 PRKCZQ05513 592 aa22.5■■□□□ 1.19
CHMP1A-207ENST00000549328 ABCB5Q2M3G0 1257 aa22.5■■□□□ 1.19
CHMP1A-207ENST00000549328 USP17L2Q6R6M4 530 aa22.5■■□□□ 1.19
CHMP1A-207ENST00000549328 TNPO2O14787 897 aaKnown RBP22.49■■□□□ 1.19
CHMP1A-207ENST00000549328 IRX3P78415 501 aaPredicted RBP22.49■■□□□ 1.19
CHMP1A-207ENST00000549328 EMILIN3Q9NT22 766 aa22.49■■□□□ 1.19
CHMP1A-207ENST00000549328 NAV1Q8NEY1 1877 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 EN2P19622 333 aaPredicted RBP22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 SLFNL1Q499Z3 407 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 SLAIN1Q8ND83 568 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 COA7Q96BR5 231 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 C12orf42Q96LP6 360 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 MORF4L1Q9UBU8 362 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 GABRQQ9UN88 632 aa22.48■■□□□ 1.19
CHMP1A-207ENST00000549328 FLT3LGP49771 235 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 USP14P54578 494 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 IRF5Q13568 498 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 RAB3GAP1Q15042 981 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 KBTBD3Q8NAB2 608 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 P2RX7Q99572 595 aaKnown RBP22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 KIAA1683Q9H0B3 1180 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 SWAP70Q9UH65 585 aa22.47■■□□□ 1.19
CHMP1A-207ENST00000549328 PRKAB2O43741 272 aa22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 PXYLP1Q8TE99 480 aa22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 GTF3C2Q8WUA4 911 aaPredicted RBP22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 DDRGK1Q96HY6 314 aa22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 MYH7P12883 1935 aa22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 BRCA2P51587 3418 aa22.46■■□□□ 1.19
CHMP1A-207ENST00000549328 CHGBP05060 677 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 HERVK_113P62684 666 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 UBXN2AP68543 259 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 AMOTL1Q8IY63 956 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 FEZ1Q99689 392 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 PUS7LQ9H0K6 701 aaKnown RBP22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 TTC41PQ6P2S7 1318 aa22.45■■□□□ 1.18
CHMP1A-207ENST00000549328 ADCY3O60266 1144 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 MYCP01106 439 aaPredicted RBP22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 GUCY1A2P33402 732 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 EVX2Q03828 476 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 MTFR1Q15390 333 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 C12orf60Q5U649 245 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 YTHDC1Q96MU7 727 aaKnown RBP22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 CRBNQ96SW2 442 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 BIN2Q9UBW5 565 aaPredicted RBP22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 SLC4A4Q9Y6R1 1079 aa22.44■■□□□ 1.18
CHMP1A-207ENST00000549328 USP17L15C9J2P7 530 aa22.43■■□□□ 1.18
CHMP1A-207ENST00000549328 USP17L13C9JLJ4 530 aa22.43■■□□□ 1.18
CHMP1A-207ENST00000549328 USP17L12C9JPN9 530 aa22.43■■□□□ 1.18
CHMP1A-207ENST00000549328 USP17L11C9JVI0 530 aa22.43■■□□□ 1.18
CHMP1A-207ENST00000549328 USP17L21D6R901 530 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms