RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 EPB41L4BQ9H329 900 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 MRS2Q9HD23 443 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 CD320Q9NPF0 282 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 C19orf73Q9NVV2 129 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 PSMD2Q13200 908 aa6.74□□□□□ -1.33
VPS29-205ENST00000548539 ALG1LQ6GMV1 187 aa6.74□□□□□ -1.33
VPS29-205ENST00000548539 CCDC74AQ96AQ1 378 aa6.74□□□□□ -1.33
VPS29-205ENST00000548539 PRDM5Q9NQX1 630 aaPredicted RBP6.74□□□□□ -1.33
VPS29-205ENST00000548539 MED14OSP0DP75 135 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 MAP1SQ66K74 1059 aaPredicted RBP6.73□□□□□ -1.33
VPS29-205ENST00000548539 PI16Q6UXB8 463 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 DTHD1Q6ZMT9 781 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 SULF2Q8IWU5 870 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 CCDC120Q96HB5 630 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 BACH2Q9BYV9 841 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 FOXQ1Q9C009 403 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 KCNK12Q9HB15 430 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 ATP13A1Q9HD20 1204 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 PICK1Q9NRD5 415 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 VTI1BQ9UEU0 232 aa6.73□□□□□ -1.33
VPS29-205ENST00000548539 FAM155AB1AL88 458 aaPredicted RBP6.72□□□□□ -1.33
VPS29-205ENST00000548539 NUAK1O60285 661 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 TCF3P15923 654 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 HOXA5P20719 270 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 VAMP1P23763 118 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 DAB2P98082 770 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 FGD1P98174 961 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 MRPL58Q14197 206 aaKnown RBP6.72□□□□□ -1.33
VPS29-205ENST00000548539 TMC4Q7Z404 712 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 KCNN1Q92952 543 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 RELTQ969Z4 430 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 ACSBG1Q96GR2 724 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 HSPA12BQ96MM6 686 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 DNAJC25Q9H1X3 360 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 IGSF5Q9NSI5 407 aa6.72□□□□□ -1.33
VPS29-205ENST00000548539 SMG5Q9UPR3 1016 aaKnown RBP6.72□□□□□ -1.33
VPS29-205ENST00000548539 ETV2O00321 342 aaPredicted RBP6.71□□□□□ -1.34
VPS29-205ENST00000548539 SORBS3O60504 671 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 EOMESO95936 686 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 RAC2P15153 192 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 GLDCP23378 1020 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 ARNTP27540 789 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 GRM2Q14416 872 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS29-205ENST00000548539 PPM1JQ5JR12 505 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 CDC37L1Q7L3B6 337 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 EPS8L3Q8TE67 593 aaKnown RBP6.71□□□□□ -1.34
VPS29-205ENST00000548539 C20orf173Q96LM9 149 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 SEMA3GQ9NS98 782 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 PPP4R2Q9NY27 417 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 MAPK8IP1Q9UQF2 711 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 JAG2Q9Y219 1238 aa6.71□□□□□ -1.34
VPS29-205ENST00000548539 GNA15P30679 374 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 FCGRTP55899 365 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 CDKAL1Q5VV42 579 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 ABHD4Q8TB40 342 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 STK35Q8TDR2 534 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 GPBAR1Q8TDU6 330 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 FBF1Q8TES7 1133 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 EMILIN2Q9BXX0 1053 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 CSADQ9Y600 493 aa6.7□□□□□ -1.34
VPS29-205ENST00000548539 LINC00310P59036 64 aa6.69□□□□□ -1.34
VPS29-205ENST00000548539 TMEM87AQ8NBN3 555 aa6.69□□□□□ -1.34
VPS29-205ENST00000548539 SLC26A8Q96RN1 970 aa6.69□□□□□ -1.34
VPS29-205ENST00000548539 NME2P22392 152 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 LDLRAD1Q5T700 205 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 C9orf131Q5VYM1 1079 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 UBE3DQ7Z6J8 389 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 ALPK1Q96QP1 1244 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 IRF2BPLQ9H1B7 796 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 CBX8Q9HC52 389 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 NLRP2Q9NX02 1062 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 SPG7Q9UQ90 795 aa6.68□□□□□ -1.34
VPS29-205ENST00000548539 H3BS24 57 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 FANCGO15287 622 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 XRCC5P13010 732 aaKnown RBP6.67□□□□□ -1.34
VPS29-205ENST00000548539 NTF4P34130 210 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 ARMCX6Q7L4S7 300 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 TTC6Q86TZ1 520 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 C12orf40Q86WS4 652 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 MFSD4AQ8N468 514 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 KCT2Q8NC54 265 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 PARD6AQ9NPB6 346 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 TPX2Q9ULW0 747 aaKnown RBP6.67□□□□□ -1.34
VPS29-205ENST00000548539 AK5Q9Y6K8 562 aa6.67□□□□□ -1.34
VPS29-205ENST00000548539 DCDC2CA8MYV0 355 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 PRR33A8MZF0 331 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 EIF4BP23588 611 aaKnown RBP6.66□□□□□ -1.34
VPS29-205ENST00000548539 ZNF252P-AS1Q0IIN9 211 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 SFRP5Q5T4F7 317 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 OSBPL7Q9BZF2 842 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 ZCCHC4Q9H5U6 513 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 SLAMF8Q9P0V8 285 aa6.66□□□□□ -1.34
VPS29-205ENST00000548539 SCAMP3O14828 347 aaKnown RBP6.65□□□□□ -1.34
VPS29-205ENST00000548539 LRIG2O94898 1065 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 SLITRK5O94991 958 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 CTSHP09668 335 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 HDLBPQ00341 1268 aaKnown RBP6.65□□□□□ -1.34
VPS29-205ENST00000548539 ZBTB37Q5TC79 503 aa6.65□□□□□ -1.34
VPS29-205ENST00000548539 NXPE4Q6UWF7 544 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms