RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TAF4BQ92750 862 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 ZSCAN10Q96SZ4 725 aaPredicted RBP17.73■□□□□ 0.43
CUX1-211ENST00000546411 MLKLQ8NB16 471 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 KIAA1524Q8TCG1 905 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 ARFGAP3Q9NP61 516 aa17.73■□□□□ 0.43
CUX1-211ENST00000546411 ZNF215Q9UL58 517 aaPredicted RBP17.73■□□□□ 0.43
CUX1-211ENST00000546411 ARHGEF28Q8N1W1 1705 aaKnown RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 PHACTR2O75167 634 aa17.72■□□□□ 0.43
CUX1-211ENST00000546411 PARP1P09874 1014 aaKnown RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 RPAP1Q9BWH6 1393 aaPredicted RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 NOP2P46087 812 aaKnown RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 SMYD4Q8IYR2 804 aaPredicted RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 SYNRGQ9UMZ2 1314 aa17.72■□□□□ 0.43
CUX1-211ENST00000546411 CEMIPQ8WUJ3 1361 aa17.72■□□□□ 0.43
CUX1-211ENST00000546411 CCNT1O60563 726 aaKnown RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 ERFEQ4G0M1 354 aa17.72■□□□□ 0.43
CUX1-211ENST00000546411 FEZ1Q99689 392 aa17.72■□□□□ 0.43
CUX1-211ENST00000546411 CDCA7Q9BWT1 371 aaPredicted RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 LUC7L2Q9Y383 392 aaKnown RBP17.72■□□□□ 0.43
CUX1-211ENST00000546411 EVCP57679 992 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 RAD51AP2Q09MP3 1159 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 KRBA2Q6ZNG9 492 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 RASGRP4Q8TDF6 673 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 FGFR1OPO95684 399 aaKnown RBP17.71■□□□□ 0.43
CUX1-211ENST00000546411 ATP1A3P13637 1013 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 TMEM132AQ24JP5 1023 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 WWC2Q6AWC2 1192 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 NCAPD2Q15021 1401 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 ARID4AP29374 1257 aaPredicted RBP17.71■□□□□ 0.43
CUX1-211ENST00000546411 GNA11P29992 359 aa17.71■□□□□ 0.43
CUX1-211ENST00000546411 PAFAH1B1P43034 410 aa17.71■□□□□ 0.42
CUX1-211ENST00000546411 KRT79Q5XKE5 535 aa17.71■□□□□ 0.42
CUX1-211ENST00000546411 PDLIM2Q96JY6 352 aa17.71■□□□□ 0.42
CUX1-211ENST00000546411 STRBPQ96SI9 672 aaKnown RBP17.71■□□□□ 0.42
CUX1-211ENST00000546411 GOLPH3LQ9H4A5 285 aa17.71■□□□□ 0.42
CUX1-211ENST00000546411 AK9Q5TCS8 1911 aa17.71■□□□□ 0.42
CUX1-211ENST00000546411 MED23Q9ULK4 1368 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 USP8P40818 1118 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 CYB5R4Q7L1T6 521 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 CUL5Q93034 780 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 CWC15Q9P013 229 aaKnown RBP17.7■□□□□ 0.42
CUX1-211ENST00000546411 PDE4DQ08499 809 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 TCP10Q12799 353 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 DYMQ7RTS9 669 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 POLR3EQ9NVU0 708 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 CTAGE9A4FU28 777 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 TMCO5BA8MYB1 307 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 SH2B2O14492 632 aaPredicted RBP17.7■□□□□ 0.42
CUX1-211ENST00000546411 TBC1D8BQ0IIM8 1120 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 PTGDRQ13258 359 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 RABL6Q3YEC7 729 aaPredicted RBP17.7■□□□□ 0.42
CUX1-211ENST00000546411 MRFAP1L1Q96HT8 127 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 SAMM50Q9Y512 469 aa17.7■□□□□ 0.42
CUX1-211ENST00000546411 FAM170AA1A519 330 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CTAGE15A4D2H0 777 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CTAGE8P0CG41 777 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 KRT9P35527 623 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 IQCEQ6IPM2 695 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CTAGE6Q86UF2 777 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CTAGE4Q8IX94 777 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 PNMA1Q8ND90 353 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 SRP68Q9UHB9 627 aaKnown RBP17.69■□□□□ 0.42
CUX1-211ENST00000546411 H0YHG0 523 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 LMAN1P49257 510 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 ERCC6LQ2NKX8 1250 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 FAM114A1Q8IWE2 563 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CCDC42Q96M95 316 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 ZNF609O15014 1411 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 A0A1W2PQ27 194 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 A0A1W2PQ64 194 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 A0A1W2PQD8 194 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 INF2Q27J81 1249 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 WDR66Q8TBY9 1149 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 SPAG5Q96R06 1193 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.69■□□□□ 0.42
CUX1-211ENST00000546411 GBP3Q9H0R5 595 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 CSRNP2Q9H175 543 aa17.69■□□□□ 0.42
CUX1-211ENST00000546411 TECPR2O15040 1411 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 SALL3Q9BXA9 1300 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 PPP1R12BO60237 982 aaPredicted RBP17.68■□□□□ 0.42
CUX1-211ENST00000546411 CYLC1P35663 651 aaPredicted RBP17.68■□□□□ 0.42
CUX1-211ENST00000546411 ERO1AQ96HE7 468 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 GGA1Q9UJY5 639 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 MACROD2A1Z1Q3 448 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 MFSD14BQ5SR56 506 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 TSPYL1Q9H0U9 437 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 PCDHB6Q9Y5E3 794 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 GTF2IP78347 998 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 CSGALNACT2Q8N6G5 542 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 GPR101Q96P66 508 aaPredicted RBP17.68■□□□□ 0.42
CUX1-211ENST00000546411 IMPACTQ9P2X3 320 aa17.68■□□□□ 0.42
CUX1-211ENST00000546411 PRPF4BQ13523 1007 aaKnown RBP17.67■□□□□ 0.42
CUX1-211ENST00000546411 SPECC1LQ69YQ0 1117 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 ISCA1Q9BUE6 129 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 PAK1Q13153 545 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 HLTFQ14527 1009 aaKnown RBP eCLIP17.67■□□□□ 0.42
CUX1-211ENST00000546411 CNGA4Q8IV77 575 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 SOS2Q07890 1332 aaPredicted RBP17.67■□□□□ 0.42
CUX1-211ENST00000546411 PLCG2P16885 1265 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 SYMPKQ92797 1274 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms