RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 EXOC5O00471 708 aa17.21■□□□□ 0.34
USP28-214ENST00000545540 KLRK1P26718 216 aa17.21■□□□□ 0.34
USP28-214ENST00000545540 CCT6AP40227 531 aaKnown RBP17.21■□□□□ 0.34
USP28-214ENST00000545540 PLIN2Q99541 437 aa17.21■□□□□ 0.34
USP28-214ENST00000545540 NACAP1Q9BZK3 213 aa17.21■□□□□ 0.34
USP28-214ENST00000545540 SART3Q15020 963 aaKnown RBP17.2■□□□□ 0.34
USP28-214ENST00000545540 ABL1P00519 1130 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 LIFRP42702 1097 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 AKAP17AQ02040 695 aaKnown RBP17.2■□□□□ 0.34
USP28-214ENST00000545540 KRT222Q8N1A0 295 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 CCDC34Q96HJ3 373 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 TIGD1Q96MW7 591 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 TRERF1Q96PN7 1200 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 CDHR2Q9BYE9 1310 aa17.2■□□□□ 0.34
USP28-214ENST00000545540 PSDA5PKW4 1024 aaPredicted RBP17.19■□□□□ 0.34
USP28-214ENST00000545540 PTPREP23469 700 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.19■□□□□ 0.34
USP28-214ENST00000545540 MORC2Q9Y6X9 1032 aaPredicted RBP17.19■□□□□ 0.34
USP28-214ENST00000545540 TMEM139Q8IV31 216 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 TC2NQ8N9U0 490 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 SOS2Q07890 1332 aaPredicted RBP17.19■□□□□ 0.34
USP28-214ENST00000545540 SLFN14P0C7P3 912 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 CCDC93Q567U6 631 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 GPIHBP1Q8IV16 184 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 KRT23Q9C075 422 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 TFCP2L1Q9NZI6 479 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 TNS2Q63HR2 1409 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 ZNF142P52746 1687 aaPredicted RBP17.19■□□□□ 0.34
USP28-214ENST00000545540 PKD1L3Q7Z443 1732 aa17.19■□□□□ 0.34
USP28-214ENST00000545540 IGHMBP2P38935 993 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 GYS2P54840 703 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 ZNF34Q8IZ26 560 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 SYMPKQ92797 1274 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 MRPL44Q9H9J2 332 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 L2HGDHQ9H9P8 463 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 CBFA2T2O43439 604 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 CYP2D6P10635 497 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 CRKLP46109 303 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 ENAHQ8N8S7 591 aaPredicted RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 GTPBP4Q9BZE4 634 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 SYCP1Q15431 976 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 PUF60Q9UHX1 559 aaKnown RBP17.18■□□□□ 0.34
USP28-214ENST00000545540 PARP3Q9Y6F1 533 aa17.18■□□□□ 0.34
USP28-214ENST00000545540 MROH5Q6ZUA9 1318 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 RASGRP4Q8TDF6 673 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 LMTK3Q96Q04 1460 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 KCNQ2O43526 872 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 ACTN4O43707 911 aaKnown RBP17.17■□□□□ 0.34
USP28-214ENST00000545540 DEXIO95424 95 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 MAGEB6P1A0A0J9YX57 407 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 USP17L12C9JPN9 530 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 USP17L21D6R901 530 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 PES1O00541 588 aaKnown RBP17.17■□□□□ 0.34
USP28-214ENST00000545540 MCM7P33993 719 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 DPYDQ12882 1025 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 SPECC1LQ69YQ0 1117 aa17.17■□□□□ 0.34
USP28-214ENST00000545540 ABCC12Q96J65 1359 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 WDR19Q8NEZ3 1342 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 LAMB4A4D0S4 1761 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 RBL2Q08999 1139 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 UTP14CQ5TAP6 766 aaKnown RBP17.16■□□□□ 0.34
USP28-214ENST00000545540 CNNM2Q9H8M5 875 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 AATFQ9NY61 560 aaKnown RBP eCLIP17.16■□□□□ 0.34
USP28-214ENST00000545540 ITPK1Q13572 414 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 RILPL1Q5EBL4 403 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 IFIT1BQ5T764 474 aaKnown RBP17.16■□□□□ 0.34
USP28-214ENST00000545540 CCDC12Q8WUD4 166 aaPredicted RBP17.16■□□□□ 0.34
USP28-214ENST00000545540 VPS16Q9H269 839 aa17.16■□□□□ 0.34
USP28-214ENST00000545540 ZBTB22O15209 634 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 GTF2E1P29083 439 aaPredicted RBP17.15■□□□□ 0.34
USP28-214ENST00000545540 CASQ1P31415 396 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 PKN1Q16512 942 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 INTS5Q6P9B9 1019 aaKnown RBP17.15■□□□□ 0.34
USP28-214ENST00000545540 PIK3AP1Q6ZUJ8 805 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 STAG1Q8WVM7 1258 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 TFR2Q9UP52 801 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 FHOD1Q9Y613 1164 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 TRIM75PA6NK02 468 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 TERF2Q15554 542 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 MORC3Q14149 939 aa17.15■□□□□ 0.34
USP28-214ENST00000545540 KIF2AO00139 706 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 PTGDRQ13258 359 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 ZNF384Q8TF68 577 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 ZNF512BQ96KM6 892 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 CTNND2Q9UQB3 1225 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 SRPRBQ9Y5M8 271 aaKnown RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 RNF225M0QZC1 329 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 PNMA6AP0CW24 399 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 ALX1Q15699 326 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 ERFEQ4G0M1 354 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 CCDC152Q4G0S7 254 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 RAD9BQ6WBX8 426 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 WASF1Q92558 559 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 CPVLQ9H3G5 476 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 C4AP0C0L4 1744 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 C4BP0C0L5 1744 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 H2AFXP16104 143 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 IL6STP40189 918 aaPredicted RBP17.14■□□□□ 0.33
USP28-214ENST00000545540 RASGRP2Q7LDG7 609 aa17.14■□□□□ 0.33
USP28-214ENST00000545540 IGSF22Q8N9C0 903 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms