RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CWC22Q9HCG8 908 aaKnown RBP6.05□□□□□ -1.44
LIMS1-214ENST00000542845 THEGQ9P2T0 379 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PNMA3Q9UL41 463 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 AGTPBP1Q9UPW5 1226 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 SLC45A1Q9Y2W3 748 aa6.05□□□□□ -1.44
LIMS1-214ENST00000542845 PRUNE2Q8WUY3 3088 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 HDLBPQ00341 1268 aaKnown RBP6.04□□□□□ -1.44
LIMS1-214ENST00000542845 NFIAQ12857 509 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 CAVIN4Q5BKX8 364 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 GJC2Q5T442 439 aaPredicted RBP6.04□□□□□ -1.44
LIMS1-214ENST00000542845 FKBP1CQ5VVH2 108 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 CCDC129Q6ZRS4 1044 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 G2E3Q7L622 706 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 MICALL1Q8N3F8 863 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 TBC1D22AQ8WUA7 517 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 NUDT12Q9BQG2 462 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 PLA2G12BQ9BX93 195 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 STK31Q9BXU1 1019 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 PRDM12Q9H4Q4 367 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 ZNF576Q9H609 170 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 MYH16Q9H6N6 1097 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 USP40Q9NVE5 1235 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 NDUFB9Q9Y6M9 179 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 LTBP2Q14767 1821 aa6.04□□□□□ -1.44
LIMS1-214ENST00000542845 PTPRFP10586 1907 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 MAST2Q6P0Q8 1798 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 PHF20L1A8MW92 1017 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 DNAJB2P25686 324 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 GCLCP48506 637 aaPredicted RBP6.03□□□□□ -1.44
LIMS1-214ENST00000542845 HMGCS2P54868 508 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 FOXK1P85037 733 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 FOXO4P98177 505 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 SPP2Q13103 211 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 PABPC4Q13310 644 aaKnown RBP eCLIP6.03□□□□□ -1.44
LIMS1-214ENST00000542845 UBE4AQ14139 1066 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 DIXDC1Q155Q3 683 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 MAP3K21Q5TCX8 1036 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 WDR78Q5VTH9 848 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 ANO1Q5XXA6 986 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 CDC42EP5Q6NZY7 148 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 HHIPL2Q6UWX4 724 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 SLC39A5Q6ZMH5 540 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 SH3RF1Q7Z6J0 888 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 CCER1Q8TC90 406 aaPredicted RBP6.03□□□□□ -1.44
LIMS1-214ENST00000542845 FERMT2Q96AC1 680 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 DDRGK1Q96HY6 314 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 PUS3Q9BZE2 481 aaKnown RBP6.03□□□□□ -1.44
LIMS1-214ENST00000542845 ZMYND15Q9H091 742 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 EPHX3Q9H6B9 360 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 FRMPD3Q5JV73 1810 aa6.03□□□□□ -1.44
LIMS1-214ENST00000542845 PLXNA1Q9UIW2 1896 aa6.02□□□□□ -1.44
LIMS1-214ENST00000542845 MAST3O60307 1309 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 SYNGAP1Q96PV0 1343 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 PHIPQ8WWQ0 1821 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TRIM43BA6NCK2 446 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 FAM86C2PA6NEL3 165 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 FAM196BA6NMK8 535 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 CASP7P55210 303 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 GNAI1P63096 354 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 MAP2K5Q13163 448 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 PICALMQ13492 652 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 SKIV2LQ15477 1246 aaKnown RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TRIM60Q495X7 471 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TMEM31Q5JXX7 168 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TRMT44Q8IYL2 757 aaKnown RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TSPYL6Q8N831 410 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TRIM43Q96BQ3 446 aaPredicted RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 RUNDC1Q96C34 613 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 TIFAQ96CG3 184 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 PAGR1Q9BTK6 254 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 MRIQ9BWK5 157 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 FAM117AQ9C073 453 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 ASCC2Q9H1I8 757 aaPredicted RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 FAM198AQ9UFP1 575 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 DOCK1Q14185 1865 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 RPAP1Q9BWH6 1393 aaPredicted RBP6.02□□□□□ -1.45
LIMS1-214ENST00000542845 DOCK2Q92608 1830 aa6.02□□□□□ -1.45
LIMS1-214ENST00000542845 CLSPNQ9HAW4 1339 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 C2orf72A6NCS6 295 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 GRXCR1A8MXD5 290 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 KBTBD13C9JR72 458 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 CTNND1O60716 968 aaKnown RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 RGS2P41220 211 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 RGS3P49796 1198 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 MRE11P49959 708 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 EPHB4P54760 987 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 IRX3P78415 501 aaPredicted RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 ATP2B2Q01814 1243 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 TFF2Q03403 129 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 FKBP5Q13451 457 aaPredicted RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 WDR43Q15061 677 aaKnown RBP eCLIP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 Q3C1V9 767 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 METTL24Q5JXM2 366 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 EPHA10Q5JZY3 1008 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 MFSD14CQ5VZR4 134 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 FBXO33Q7Z6M2 555 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 PROCA1Q8NCQ7 364 aaPredicted RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 GPRC5AQ8NFJ5 357 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms