RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CCDC24Q8N4L8 307 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 CACTINQ8WUQ7 758 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ARPC5LQ9BPX5 153 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 FUCA2Q9BTY2 467 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ZNF446Q9NWS9 450 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 CLIP2Q9UDT6 1046 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ZNF232Q9UNY5 417 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 MARCH6O60337 910 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ECEL1O95672 775 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ZSCAN22P10073 491 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 CASQ1P31415 396 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 GYS2P54840 703 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 DNM1Q05193 864 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 SYT10Q6XYQ8 523 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 FAM200AQ8TCP9 573 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 TBC1D22AQ8WUA7 517 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 NLRP3Q96P20 1036 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 PPME1Q9Y570 386 aa9.15□□□□□ -0.94
PDLIM5-221ENST00000542407 ZMYM6O95789 1325 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 CCDC196A0A1B0GTZ2 297 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 STX6O43752 255 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 TRIM37O94972 964 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 GYS1P13807 737 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 TEX35Q5T0J7 233 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 SLC51AQ86UW1 340 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 STRBPQ96SI9 672 aaKnown RBP9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 MTMR6Q9Y217 621 aa9.15□□□□□ -0.95
PDLIM5-221ENST00000542407 KLRK1P26718 216 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 GYG1P46976 350 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 RPS8P62241 208 aaKnown RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 ARID5BQ14865 1188 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 SART3Q15020 963 aaKnown RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 ERCC6LQ2NKX8 1250 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 MB21D2Q8IYB1 491 aaPredicted RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 NKX2-3Q8TAU0 364 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 LRRC2Q9BYS8 371 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 EPB41L4AQ9HCS5 686 aaPredicted RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 TYRO3Q06418 890 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 ANO6Q4KMQ2 910 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 FBXO33Q7Z6M2 555 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 ERO1AQ96HE7 468 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 FAM84BQ96KN1 310 aaPredicted RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 TNS1Q9HBL0 1735 aaKnown RBP9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 NRXN2Q9P2S2 1712 aa9.14□□□□□ -0.95
PDLIM5-221ENST00000542407 MAST2Q6P0Q8 1798 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 VPS37CA5D8V6 355 aaPredicted RBP9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 PFKFB2O60825 505 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 SLU7O95391 586 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 NEFHP12036 1026 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 EVCP57679 992 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 ANTXR2P58335 489 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 ALX1Q15699 326 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 IMMTQ16891 758 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 PRR5LQ6MZQ0 368 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 MAGEB6Q8N7X4 407 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 BRF1Q92994 677 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 F13A1P00488 732 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 ERCC3P19447 782 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF75DP51815 510 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 HAND2P61296 217 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 SCRN1Q12765 414 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 MAP3K11Q16584 847 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 CCDC144BQ3MJ40 725 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 ADGRA1Q86SQ6 560 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 TBC1D10CQ8IV04 446 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 CCDC144CPQ8IYA2 1237 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 TMEM87AQ8NBN3 555 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 DEF6Q9H4E7 631 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 RMI1Q9H9A7 625 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 CBX8Q9HC52 389 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 PDS5AQ29RF7 1337 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 PNPLA7Q6ZV29 1317 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 LRRC37AA6NMS7 1700 aa9.13□□□□□ -0.95
PDLIM5-221ENST00000542407 SMAPO00193 183 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 KIF4AO95239 1232 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 MAP3K12Q12852 859 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 CRY2Q49AN0 593 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 JAKMIP3Q5VZ66 844 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 FILIP1Q7Z7B0 1213 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF384Q8TF68 577 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 NUP62CLQ9H1M0 184 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ATP6V1DQ9Y5K8 247 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 TACC3Q9Y6A5 838 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 MYH13Q9UKX3 1938 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 LTBP1Q14766 1721 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 KIAA1551Q9HCM1 1747 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 WDR19Q8NEZ3 1342 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 SALL1Q9NSC2 1324 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 MBD4O95243 580 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 CTDNEP1O95476 244 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ATP2B1P20020 1258 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 APOBRQ0VD83 1088 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 STK3Q13188 491 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 TXNRD1Q16881 649 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 CNBD1Q8NA66 436 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 SMARCC2Q8TAQ2 1214 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF396Q96N95 335 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ZCCHC17Q9NP64 241 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms