RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 DPF2Q92785 391 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 EHD4Q9H223 541 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 VEZTQ9HBM0 779 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 MYOZ2Q9NPC6 264 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 ZNF70Q9UC06 446 aaPredicted RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 FAM198AQ9UFP1 575 aa8.64□□□□□ -1.03
VPS53-205ENST00000541903 BAZ2AQ9UIF9 1905 aaKnown RBP8.64□□□□□ -1.03
VPS53-205ENST00000541903 NID2Q14112 1375 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 ATRNL1Q5VV63 1379 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 WDR33Q9C0J8 1336 aaKnown RBP8.63□□□□□ -1.03
VPS53-205ENST00000541903 CCDC196A0A1B0GTZ2 297 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 CLRN2A0PK11 232 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 TCP10L2B9ZVM9 353 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 JAK2O60674 1132 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 DDAH1O94760 285 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 CALM1P0DP23 149 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 CALM2P0DP24 149 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 CALM3P0DP25 149 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 YBX3P16989 372 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS53-205ENST00000541903 GABPAQ06546 454 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 RTN1Q16799 776 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 CATIPQ7Z7H3 387 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 MICALL2Q8IY33 904 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 ZNF654Q8IZM8 581 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 NUP133Q8WUM0 1156 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 GBP4Q96PP9 640 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 MYL10Q9BUA6 226 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 KAT14Q9H8E8 782 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 SENP2Q9HC62 589 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 NCOA5Q9HCD5 579 aaKnown RBP8.63□□□□□ -1.03
VPS53-205ENST00000541903 TCP11L1Q9NUJ3 509 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 RNF181Q9P0P0 153 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 PI4KBQ9UBF8 816 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 HPS5Q9UPZ3 1129 aa8.63□□□□□ -1.03
VPS53-205ENST00000541903 PLIN4Q96Q06 1357 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 FOCADQ5VW36 1801 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 H7C1D1 291 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 STX6O43752 255 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 NMT2O60551 498 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 BRD1O95696 1058 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 RXRAP19793 462 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 TNNI2P48788 182 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 TNFAIP1Q13829 316 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 PPP2R5BQ15173 497 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 KIF4BQ2VIQ3 1234 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 PPP4R3BQ5MIZ7 849 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 RBM26Q5T8P6 1007 aaKnown RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 FKBP1CQ5VVH2 108 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 LARP1BQ659C4 914 aaKnown RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 DGKHQ86XP1 1220 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 FOXP4Q8IVH2 680 aaPredicted RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 ZFPM1Q8IX07 1006 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 CCDC144CPQ8IYA2 1237 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 GPC2Q8N158 579 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 NSUN7Q8NE18 718 aaKnown RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 NEDD1Q8NHV4 660 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 SMARCC2Q8TAQ2 1214 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 FAM151AQ8WW52 585 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 TNPO1Q92973 898 aaKnown RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 DDX11Q96FC9 970 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 ZBED3Q96IU2 234 aaPredicted RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 CCDC17Q96LX7 622 aa8.62□□□□□ -1.03
VPS53-205ENST00000541903 CNOT7Q9UIV1 285 aaKnown RBP8.62□□□□□ -1.03
VPS53-205ENST00000541903 SHTN1A0MZ66 631 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 VPS37CA5D8V6 355 aaPredicted RBP8.61□□□□□ -1.03
VPS53-205ENST00000541903 DDTLA6NHG4 134 aaPredicted RBP8.61□□□□□ -1.03
VPS53-205ENST00000541903 WNT10BO00744 389 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 CTDNEP1O95476 244 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 SYT1P21579 422 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 LMOD1P29536 600 aaPredicted RBP8.61□□□□□ -1.03
VPS53-205ENST00000541903 SHMT1P34896 483 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 PKP1Q13835 747 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 GPR162Q16538 588 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 SH3BP5LQ7L8J4 393 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 FAM83AQ86UY5 434 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 CTCFLQ8NI51 663 aaPredicted RBP8.61□□□□□ -1.03
VPS53-205ENST00000541903 ANKS1AQ92625 1134 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 CSRNP1Q96S65 589 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 RBM28Q9NW13 759 aaKnown RBP8.61□□□□□ -1.03
VPS53-205ENST00000541903 STX8Q9UNK0 236 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 CDK5RAP2Q96SN8 1893 aa8.61□□□□□ -1.03
VPS53-205ENST00000541903 STK36Q9NRP7 1315 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 ECM29Q5VYK3 1845 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 H3BQV1 296 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 MPHOSPH10O00566 681 aaKnown RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 GRIN3BO60391 1043 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 ZSCAN22P10073 491 aaPredicted RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 TOP1P11387 765 aaKnown RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 AKR1B1P15121 316 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 CDC27P30260 824 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 KIF5BP33176 963 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 NFKBIBQ15653 356 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 NBPF9Q3BBW0 867 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 TBC1D10BQ4KMP7 808 aaPredicted RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 IFFO2Q5TF58 517 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 FOXD4L5Q5VV16 416 aaPredicted RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 C9orf131Q5VYM1 1079 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 RCSD1Q6JBY9 416 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 SAMD7Q7Z3H4 446 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 TRIM22Q8IYM9 498 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms