RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SCNN1DP51172 638 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 NR5A1Q13285 461 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 ANO1Q5XXA6 986 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 CERS5Q8N5B7 392 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 SHISA4Q96DD7 197 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 MKNK2Q9HBH9 465 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 DDX19AQ9NUU7 478 aaKnown RBP16.83■□□□□ 0.28
CLIP1-216ENST00000541410 USP25Q9UHP3 1055 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 NAV1Q8NEY1 1877 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 NRXN2Q9P2S2 1712 aa16.83■□□□□ 0.28
CLIP1-216ENST00000541410 CCDC196A0A1B0GTZ2 297 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 SPTLC2O15270 562 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 SNW1Q13573 536 aaKnown RBP16.82■□□□□ 0.28
CLIP1-216ENST00000541410 C2CD5Q86YS7 1000 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 FLAD1Q8NFF5 587 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 OXER1Q8TDS5 423 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 MASTLQ96GX5 879 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 MTA3Q9BTC8 594 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.82■□□□□ 0.28
CLIP1-216ENST00000541410 DBNDD1Q9H9R9 158 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 IL17RBQ9NRM6 502 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 VPS54Q9P1Q0 977 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 V9GY48 417 aaPredicted RBP16.82■□□□□ 0.28
CLIP1-216ENST00000541410 STK36Q9NRP7 1315 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 CCDC192P0DO97 292 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 ATP2B1P20020 1258 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 ALDH1B1P30837 517 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 PPP4CP60510 307 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 TYRO3Q06418 890 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 PICALMQ13492 652 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 ATL3Q6DD88 541 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 CCDC73Q6ZRK6 1079 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 DIS3L2Q8IYB7 885 aaKnown RBP16.82■□□□□ 0.28
CLIP1-216ENST00000541410 POLR3EQ9NVU0 708 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 NID2Q14112 1375 aa16.82■□□□□ 0.28
CLIP1-216ENST00000541410 GPR75-ASB3A0A0A6YYF3 556 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 G3V3G9 751 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 DEXIO95424 95 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 DCAF8Q5TAQ9 597 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 RCSD1Q6JBY9 416 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 MRVI1Q9Y6F6 885 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 WDHD1O75717 1129 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-216ENST00000541410 MMP1P03956 469 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 PCP11498 1178 aaKnown RBP16.81■□□□□ 0.28
CLIP1-216ENST00000541410 NDUFA8P51970 172 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 DLEC1Q9Y238 1755 aa16.81■□□□□ 0.28
CLIP1-216ENST00000541410 MYH1P12882 1939 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 RHBDL3P58872 404 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 AKAP17AQ02040 695 aaKnown RBP16.8■□□□□ 0.28
CLIP1-216ENST00000541410 RASGRP2Q7LDG7 609 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 DAGLAQ9Y4D2 1042 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 SLX4Q8IY92 1834 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 FLT1P17948 1338 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 TSPY3P0CV98 308 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 TSPY8P0CW00 308 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 VEGFAP15692 232 aaPredicted RBP16.8■□□□□ 0.28
CLIP1-216ENST00000541410 U2AF2P26368 475 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLIP1-216ENST00000541410 FUT2Q10981 343 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 SLC15A2Q16348 729 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 PKN1Q16512 942 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 ADALQ6DHV7 355 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 SRBD1Q8N5C6 995 aaKnown RBP16.8■□□□□ 0.28
CLIP1-216ENST00000541410 WASF1Q92558 559 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 COA1Q9GZY4 146 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 TTF2Q9UNY4 1162 aaKnown RBP16.8■□□□□ 0.28
CLIP1-216ENST00000541410 ADAMTSL1Q8N6G6 1762 aa16.8■□□□□ 0.28
CLIP1-216ENST00000541410 FAM205CA6NFA0 338 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 ANO6Q4KMQ2 910 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 TMC4Q7Z404 712 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 AMOTL1Q8IY63 956 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 ENGASEQ8NFI3 743 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 TBC1D22AQ8WUA7 517 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 MRPS27Q92552 414 aaKnown RBP16.79■□□□□ 0.28
CLIP1-216ENST00000541410 CLIC6Q96NY7 704 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 YEATS4O95619 227 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 FAM160A1Q05DH4 1040 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 LUZP1Q86V48 1076 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 NOSTRINQ8IVI9 506 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 ZNF444Q8N0Y2 327 aaPredicted RBP16.79■□□□□ 0.28
CLIP1-216ENST00000541410 CTCFLQ8NI51 663 aaPredicted RBP16.79■□□□□ 0.28
CLIP1-216ENST00000541410 KCNG4Q8TDN1 519 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 TMX4Q9H1E5 349 aaPredicted RBP16.79■□□□□ 0.28
CLIP1-216ENST00000541410 STX8Q9UNK0 236 aa16.79■□□□□ 0.28
CLIP1-216ENST00000541410 H0YIN7 160 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 ZBTB22O15209 634 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 KINO60870 393 aaKnown RBP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 HMGB2P26583 209 aaKnown RBP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 SAFBQ15424 915 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 DEFB132Q7Z7B7 95 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 PDLIM2Q96JY6 352 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 RNF26Q9BY78 433 aaPredicted RBP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 PCDHAC2Q9Y5I4 1007 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 FAM205AQ6ZU69 1335 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 SLURP2P0DP57 97 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 TOB1P50616 345 aaPredicted RBP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 SLC39A14Q15043 492 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 SPECC1Q5M775 1068 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 AXDND1Q5T1B0 1012 aaPredicted RBP16.78■□□□□ 0.28
CLIP1-216ENST00000541410 STAG2Q8N3U4 1231 aa16.78■□□□□ 0.28
CLIP1-216ENST00000541410 CAMKK2Q96RR4 588 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms