RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RIPOR2Q9Y4F9 1068 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 NUB1Q9Y5A7 615 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 EMILIN1Q9Y6C2 1016 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 GOLGA6L9A6NEM1 432 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 PPFIA3O75145 1194 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 GCP02774 474 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 DCTN1Q14203 1278 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 MYBPC3Q14896 1274 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 SDCCAG8Q86SQ7 713 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 KCNH5Q8NCM2 988 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 CABLES1Q8TDN4 633 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 ZFAND2BQ8WV99 257 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 LRRCC1Q9C099 1032 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 ANO10Q9NW15 660 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 C15orf41Q9Y2V0 281 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 MED1Q15648 1581 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 SLIT3O75094 1523 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 BUB1BO60566 1050 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 TFRCP02786 760 aaKnown RBP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 MYBL1P10243 752 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 GOLGA8FQ08AF8 430 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 GOLGA8DPQ0D2H9 430 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 G3BP1Q13283 466 aaKnown RBP eCLIP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 STIM1Q13586 685 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 SMARCC2Q8TAQ2 1214 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 CUL5Q93034 780 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 TBC1D31Q96DN5 1066 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 ZNF570Q96NI8 536 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 MTRQ99707 1265 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 TRIM7Q9C029 511 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 HOOK1Q9UJC3 728 aaKnown RBP10.67□□□□□ -0.7
CLIP1-214ENST00000540539 CDC23Q9UJX2 597 aa10.67□□□□□ -0.7
CLIP1-214ENST00000540539 NFAT5O94916 1531 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 ADCY9O60503 1353 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 GOLGA6L7A0A1B0GV03 622 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 HMMRO75330 724 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 TUBBP07437 444 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 EIF4BP23588 611 aaKnown RBP10.66□□□□□ -0.7
CLIP1-214ENST00000540539 CUL3Q13618 768 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 WDR93Q6P2C0 686 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 TMEM139Q8IV31 216 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 SDR16C5Q8N3Y7 309 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 CRYBG1Q9Y4K1 1723 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 LTN1O94822 1766 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 A6NHS1 94 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 ARHGAP6O43182 974 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 MYO1BO43795 1136 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 PDCLQ13371 301 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 DRP2Q13474 957 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 NAA35Q5VZE5 725 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 ARMC9Q7Z3E5 817 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 SYCP3Q8IZU3 236 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 NBPF15Q8N660 670 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 COG1Q8WTW3 980 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 FBXW7Q969H0 707 aa10.66□□□□□ -0.7
CLIP1-214ENST00000540539 MAP3K19Q56UN5 1328 aa10.65□□□□□ -0.7
CLIP1-214ENST00000540539 PHRF1Q9P1Y6 1649 aaKnown RBP10.65□□□□□ -0.7
CLIP1-214ENST00000540539 LIN7AO14910 233 aaPredicted RBP10.65□□□□□ -0.7
CLIP1-214ENST00000540539 IFT88Q13099 833 aa10.65□□□□□ -0.7
CLIP1-214ENST00000540539 BLMHQ13867 455 aa10.65□□□□□ -0.7
CLIP1-214ENST00000540539 KARSQ15046 597 aaKnown RBP10.65□□□□□ -0.7
CLIP1-214ENST00000540539 CFAP53Q96M91 514 aa10.65□□□□□ -0.7
CLIP1-214ENST00000540539 ABCC4O15439 1325 aa10.65□□□□□ -0.7
CLIP1-214ENST00000540539 A0A1B0GVL5 298 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 MGRN1O60291 552 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 ZNF189O75820 626 aaPredicted RBP10.65□□□□□ -0.71
CLIP1-214ENST00000540539 HSPA4P34932 840 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 TUBB4BP68371 445 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 DEUP1Q05D60 604 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 IFFO1Q0D2I5 559 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 SPRED3Q2MJR0 410 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 PPP1R15BQ5SWA1 713 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 Q6ZUG5 572 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 TOGARAM2Q6ZUX3 1019 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 CCDC170Q8IYT3 715 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 NOA1Q8NC60 698 aaKnown RBP10.65□□□□□ -0.71
CLIP1-214ENST00000540539 AGAP3Q96P47 875 aa10.65□□□□□ -0.71
CLIP1-214ENST00000540539 ACTR5Q9H9F9 607 aaPredicted RBP10.65□□□□□ -0.71
CLIP1-214ENST00000540539 SMIM24O75264 130 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 SASH1O94885 1247 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 UPP2O95045 317 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 ATP4AP20648 1035 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 GJA8P48165 433 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 CTCFP49711 727 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-214ENST00000540539 ST3GAL1Q11201 340 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 GDAP1L1Q96MZ0 367 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 UBE2OQ9C0C9 1292 aaKnown RBP10.64□□□□□ -0.71
CLIP1-214ENST00000540539 NOD2Q9HC29 1040 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 TRIM35Q9UPQ4 493 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 ZNF510Q9Y2H8 683 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 PEAK1Q9H792 1746 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 PNPLA6Q8IY17 1366 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 CDK12Q9NYV4 1490 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-214ENST00000540539 ATP6V1G2O95670 118 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 CYP11B2P19099 503 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 AMPHP49418 695 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 PDE1AP54750 535 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 INHBCP55103 352 aa10.64□□□□□ -0.71
CLIP1-214ENST00000540539 ZC3H6P61129 1189 aaKnown RBP10.64□□□□□ -0.71
CLIP1-214ENST00000540539 KCNV2Q8TDN2 545 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms