RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SWAP70Q9UH65 585 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 KDM4AO75164 1064 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 RASA1P20936 1047 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 SHMT1P34896 483 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 RUFY3Q7L099 469 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 CYB5R4Q7L1T6 521 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ZNF408Q9H9D4 720 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 FZD1Q9UP38 647 aa22.36■■□□□ 1.17
TNFRSF1A-213ENST00000540022 MIGA2Q7L4E1 593 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ESR2Q92731 530 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 TCEANC2Q96MN5 208 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ZNF287Q9HBT7 754 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ZSWIM5Q9P217 1185 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 HERC5Q9UII4 1024 aaKnown RBP22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 CYP46A1Q9Y6A2 500 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 SIPA1L1O43166 1804 aa22.35■■□□□ 1.17
TNFRSF1A-213ENST00000540022 THSD7BQ9C0I4 1608 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 SSC5DA1L4H1 1573 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 RANBP6O60518 1105 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 HMGB1P09429 215 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 HSPA1AP0DMV8 641 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 HSPA1BP0DMV9 641 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 RPS6KB1P23443 525 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 NEK4P51957 841 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ANTXR2P58335 489 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 MAP3K10Q02779 954 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 DHX32Q7L7V1 743 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 CHST3Q7LGC8 479 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 SAPCD2Q86UD0 394 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 TRIM34Q9BYJ4 488 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.34■■□□□ 1.172e-7■■■□□ 17.4
TNFRSF1A-213ENST00000540022 TAOK2Q9UL54 1235 aa22.34■■□□□ 1.17
TNFRSF1A-213ENST00000540022 TBC1D12O60347 775 aa22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 EXOSC10Q01780 885 aaKnown RBP22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 FAM47AQ5JRC9 791 aa22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 TATDN1Q6P1N9 297 aa22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 ZNF444Q8N0Y2 327 aaPredicted RBP22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 RBM19Q9Y4C8 960 aaKnown RBP22.33■■□□□ 1.17
TNFRSF1A-213ENST00000540022 WDR33Q9C0J8 1336 aaKnown RBP22.33■■□□□ 1.16
TNFRSF1A-213ENST00000540022 MCM5P33992 734 aa22.32■■□□□ 1.16
TNFRSF1A-213ENST00000540022 TSPY2A6NKD2 308 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 PRC1O43663 620 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 TFAP4Q01664 338 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 RRP1BQ14684 758 aaKnown RBP22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 TTC14Q96N46 770 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 LRRC2Q9BYS8 371 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 PRKG1Q13976 671 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 SUPT20HL1Q3ZLR7 823 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 CYP4F22Q6NT55 531 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 MOB2Q70IA6 237 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 CAPNS2Q96L46 248 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 PDRG1Q9NUG6 133 aa22.31■■□□□ 1.16
TNFRSF1A-213ENST00000540022 AKR1B1P15121 316 aa22.3■■□□□ 1.16
TNFRSF1A-213ENST00000540022 CERKLQ49MI3 558 aaPredicted RBP22.3■■□□□ 1.16
TNFRSF1A-213ENST00000540022 HOOK2Q96ED9 719 aa22.3■■□□□ 1.16
TNFRSF1A-213ENST00000540022 ZKSCAN3Q9BRR0 538 aa22.3■■□□□ 1.16
TNFRSF1A-213ENST00000540022 TSPY3P0CV98 308 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 TSPY8P0CW00 308 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 NT5C2P49902 561 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 SHROOM1Q2M3G4 852 aaPredicted RBP22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 PAXIP1Q6ZW49 1069 aaPredicted RBP22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 HHIPL1Q96JK4 782 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 CCDC17Q96LX7 622 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 GPHNQ9NQX3 736 aaPredicted RBP22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 WDR19Q8NEZ3 1342 aa22.29■■□□□ 1.16
TNFRSF1A-213ENST00000540022 CD2BP2O95400 341 aaKnown RBP22.28■■□□□ 1.16
TNFRSF1A-213ENST00000540022 DCAF15Q66K64 600 aa22.28■■□□□ 1.16
TNFRSF1A-213ENST00000540022 NEDD1Q8NHV4 660 aa22.28■■□□□ 1.16
TNFRSF1A-213ENST00000540022 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.28■■□□□ 1.16
TNFRSF1A-213ENST00000540022 GBA2Q9HCG7 927 aaPredicted RBP22.28■■□□□ 1.16
TNFRSF1A-213ENST00000540022 PHF20L1A8MW92 1017 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 NMT2O60551 498 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 GDF11O95390 407 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 ECE1P42892 770 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 AK2P54819 239 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 JAG1P78504 1218 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 Q6ZUG5 572 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 IGDCC4Q8TDY8 1250 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 IL17RBQ9NRM6 502 aa22.27■■□□□ 1.16
TNFRSF1A-213ENST00000540022 IFIT3O14879 490 aaKnown RBP22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 ST18O60284 1047 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 TOB2Q14106 344 aaPredicted RBP22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 IQCA1Q86XH1 822 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 TMEM87BQ96K49 555 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 ZSCAN10Q96SZ4 725 aaPredicted RBP22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 ZNF341Q9BYN7 854 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 ALDH8A1Q9H2A2 487 aaPredicted RBP22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 MPHOSPH10O00566 681 aaKnown RBP22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 HUNKP57058 714 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 GRM1Q13255 1194 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 UBAC1Q9BSL1 405 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 MTA3Q9BTC8 594 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 AGXT2Q9BYV1 514 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 TCP11L1Q9NUJ3 509 aa22.26■■□□□ 1.15
TNFRSF1A-213ENST00000540022 TNKSO95271 1327 aa22.25■■□□□ 1.15
TNFRSF1A-213ENST00000540022 PAPPA2Q9BXP8 1791 aa22.25■■□□□ 1.15
TNFRSF1A-213ENST00000540022 PLIN4Q96Q06 1357 aa22.25■■□□□ 1.15
TNFRSF1A-213ENST00000540022 SH2B2O14492 632 aaPredicted RBP22.25■■□□□ 1.15
TNFRSF1A-213ENST00000540022 USP2O75604 605 aaPredicted RBP22.25■■□□□ 1.15
TNFRSF1A-213ENST00000540022 CAP2P40123 477 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms