RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 WASF1Q92558 559 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 NOL10Q9BSC4 688 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 HOOK1Q9UJC3 728 aaKnown RBP13.21□□□□□ -0.29
SYNE1-234ENST00000536990 SLC4A4Q9Y6R1 1079 aa13.21□□□□□ -0.29
SYNE1-234ENST00000536990 SART3Q15020 963 aaKnown RBP13.21□□□□□ -0.3
SYNE1-234ENST00000536990 PARP10Q53GL7 1025 aa13.21□□□□□ -0.3
SYNE1-234ENST00000536990 TOGARAM2Q6ZUX3 1019 aa13.21□□□□□ -0.3
SYNE1-234ENST00000536990 DIS3L2Q8IYB7 885 aaKnown RBP13.21□□□□□ -0.3
SYNE1-234ENST00000536990 SERTAD1Q9UHV2 236 aa13.21□□□□□ -0.3
SYNE1-234ENST00000536990 GOLGA6L9A6NEM1 432 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 POLR2DO15514 142 aaKnown RBP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 TPM1P09493 284 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 ATP6V1AP38606 617 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 CRKLP46109 303 aaKnown RBP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 LCORLQ8N3X6 602 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 KIFC2Q96AC6 838 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 LRP2BPQ9P2M1 347 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 KCNJ14Q9UNX9 436 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 ADKP55263 362 aaKnown RBP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 WTAPQ15007 396 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 SAFBQ15424 915 aaKnown RBP eCLIP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 ZNF827Q17R98 1081 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 STAG1Q8WVM7 1258 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 UBXN6Q9BZV1 441 aa13.2□□□□□ -0.3
SYNE1-234ENST00000536990 FOXP1Q9H334 677 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-234ENST00000536990 PNPLA7Q6ZV29 1317 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 ERICH2A1L162 156 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 ACTN4O43707 911 aaKnown RBP13.19□□□□□ -0.3
SYNE1-234ENST00000536990 CASQ1P31415 396 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 GNG11P61952 73 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 TRMT44Q8IYL2 757 aaKnown RBP13.19□□□□□ -0.3
SYNE1-234ENST00000536990 TRIM22Q8IYM9 498 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 GRAMD1CQ8IYS0 662 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 FAM177A1Q8N128 213 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-234ENST00000536990 PDILTQ8N807 584 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 SMARCE1Q969G3 411 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 ZKSCAN3Q9BRR0 538 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 MRFAP1Q9Y605 127 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 RTN1Q16799 776 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 RILPL1Q5EBL4 403 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 RSRC2Q7L4I2 434 aaKnown RBP13.19□□□□□ -0.3
SYNE1-234ENST00000536990 TRIML1Q8N9V2 468 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 SPATA20Q8TB22 786 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 EPC1Q9H2F5 836 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 NIP7Q9Y221 180 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNE1-234ENST00000536990 PCDHB6Q9Y5E3 794 aa13.19□□□□□ -0.3
SYNE1-234ENST00000536990 ATP8B1O43520 1251 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 SEC31AO94979 1220 aaKnown RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CAMTA2O94983 1202 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CYP2C19P33261 490 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 NR1I3Q14994 352 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 MIGA1Q8NAN2 632 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 DOT1LQ8TEK3 1739 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 SAMSN1Q9NSI8 373 aaKnown RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 DACH1Q9UI36 760 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 SRPRBQ9Y5M8 271 aaKnown RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CDK11BP21127 795 aaKnown RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 NUTM2AQ8IVF1 878 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 TMTC2Q8N394 836 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 RNF41Q9H4P4 317 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-234ENST00000536990 RAI14Q9P0K7 980 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 PLCH1Q4KWH8 1693 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 A0A1B0GTH6 734 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 TBC1D8O95759 1140 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 PPP2R3AQ06190 1150 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CHRNDQ07001 517 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 NR5A1Q13285 461 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 USP49Q70CQ1 688 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 ACSBG1Q96GR2 724 aa13.18□□□□□ -0.3
SYNE1-234ENST00000536990 CCDC196A0A1B0GTZ2 297 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 SASH3O75995 380 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 PLCD1P51178 756 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 DDB1Q16531 1140 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 CC2D1AQ6P1N0 951 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 APTXQ7Z2E3 356 aaKnown RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 CCDC82Q8N4S0 544 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 CRACR2BQ8N4Y2 399 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 GPR161Q8N6U8 529 aaKnown RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 MTA3Q9BTC8 594 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 LOC102724428A0A0B4J2F2 783 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 NTSR2O95665 410 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 CYP7A1P22680 504 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 ERCC5P28715 1186 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 SIK1P57059 783 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 OXER1Q8TDS5 423 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 DESI2Q9BSY9 194 aa13.17□□□□□ -0.3
SYNE1-234ENST00000536990 CDCA7Q9BWT1 371 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-234ENST00000536990 RTL9Q8NET4 1388 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 ERICH4A6NGS2 130 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 DEXIO95424 95 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 MRPL44Q9H9J2 332 aaKnown RBP13.16□□□□□ -0.3
SYNE1-234ENST00000536990 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-234ENST00000536990 IQSEC3Q9UPP2 1182 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-234ENST00000536990 BCORQ6W2J9 1755 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 PPARAQ07869 468 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 MTF1Q14872 753 aa13.16□□□□□ -0.3
SYNE1-234ENST00000536990 CMTR1Q8N1G2 835 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms