RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 USP17L5A8MUK1 530 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 USP17L12C9JPN9 530 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 USP17L21D6R901 530 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 GDF11O95390 407 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 CYP2D6P10635 497 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 MOGSQ13724 837 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 C12orf60Q5U649 245 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 CCDC84Q86UT8 332 aaPredicted RBP18.03■□□□□ 0.48
CPSF1-208ENST00000532560 FAM43AQ8N2R8 423 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 EPB41L4AQ9HCS5 686 aaPredicted RBP18.03■□□□□ 0.48
CPSF1-208ENST00000532560 SWAP70Q9UH65 585 aa18.03■□□□□ 0.48
CPSF1-208ENST00000532560 BTBD19C9JJ37 291 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 TBC1D8O95759 1140 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 JAG1P78504 1218 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 EVX2Q03828 476 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 CERKLQ49MI3 558 aaPredicted RBP18.02■□□□□ 0.48
CPSF1-208ENST00000532560 SBK1Q52WX2 424 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 CTR9Q6PD62 1173 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 CENPQQ7L2Z9 268 aaPredicted RBP18.02■□□□□ 0.48
CPSF1-208ENST00000532560 ANKRD23Q86SG2 305 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 ZNF280CQ8ND82 737 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 RILPL2Q969X0 211 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 AS3MTQ9HBK9 375 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 HELLSQ9NRZ9 838 aa18.02■□□□□ 0.48
CPSF1-208ENST00000532560 LOC285556D6RIA3 1793 aa18.02■□□□□ 0.47
CPSF1-208ENST00000532560 TRIM75PA6NK02 468 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 CRHR2Q13324 411 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 SHROOM1Q2M3G4 852 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-208ENST00000532560 TTC22Q5TAA0 569 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 ERICH6BQ5W0A0 696 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 FASTKD5Q7L8L6 764 aaKnown RBP18.01■□□□□ 0.47
CPSF1-208ENST00000532560 WDR18Q9BV38 432 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 R3HDMLQ9H3Y0 253 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 ROBO3Q96MS0 1386 aa18.01■□□□□ 0.47
CPSF1-208ENST00000532560 MYH8P13535 1937 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 CYP2D7A0A087X1C5 515 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 A0A0D9SFI3 127 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 PATL2C9JE40 543 aaKnown RBP18■□□□□ 0.47
CPSF1-208ENST00000532560 GPR25O00155 361 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 GH2P01242 217 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 TAF1CQ15572 869 aaPredicted RBP18■□□□□ 0.47
CPSF1-208ENST00000532560 ABCB5Q2M3G0 1257 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 C16orf86Q6ZW13 317 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 SLC44A5Q8NCS7 719 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 DYNLL2Q96FJ2 89 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 NACAP1Q9BZK3 213 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 CASP8AP2Q9UKL3 1982 aa18■□□□□ 0.47
CPSF1-208ENST00000532560 GSPT1P15170 499 aaKnown RBP17.99■□□□□ 0.47
CPSF1-208ENST00000532560 TDO2P48775 406 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 SPP2Q13103 211 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 NMIQ13287 307 aaPredicted RBP17.99■□□□□ 0.47
CPSF1-208ENST00000532560 GPAT2Q6NUI2 795 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 IFNL3Q8IZI9 196 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 PROCA1Q8NCQ7 364 aaPredicted RBP17.99■□□□□ 0.47
CPSF1-208ENST00000532560 FAM227BQ96M60 508 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 ZFYVE28Q9HCC9 887 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 SLC45A1Q9Y2W3 748 aa17.99■□□□□ 0.47
CPSF1-208ENST00000532560 SMIM22K7EJ46 135 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 HIP1O00291 1037 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 FOXP2O15409 715 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 APPP05067 770 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 SDSP20132 328 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 MCMDC2Q4G0Z9 681 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 SH3D19Q5HYK7 790 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 CCDC129Q6ZRS4 1044 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 ZNF296Q8WUU4 475 aaPredicted RBP17.98■□□□□ 0.47
CPSF1-208ENST00000532560 CABP5Q9NP86 173 aa17.98■□□□□ 0.47
CPSF1-208ENST00000532560 PDHXO00330 501 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 FKTNO75072 461 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 CAPN15O75808 1086 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 CDK8P49336 464 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 MTMR2Q13614 643 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 GADL1Q6ZQY3 521 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 CCDC17Q96LX7 622 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 PARK7Q99497 189 aaKnown RBP17.97■□□□□ 0.47
CPSF1-208ENST00000532560 NAPBQ9H115 298 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 AGTPBP1Q9UPW5 1226 aa17.97■□□□□ 0.47
CPSF1-208ENST00000532560 TLR2O60603 784 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 GUCY1A2P33402 732 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 HMGCS2P54868 508 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 BACE1P56817 501 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 RAB3GAP1Q15042 981 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 TMEM179Q6ZVK1 233 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 ZNF589Q86UQ0 364 aaPredicted RBP17.96■□□□□ 0.47
CPSF1-208ENST00000532560 DIAPH3Q9NSV4 1193 aa17.96■□□□□ 0.47
CPSF1-208ENST00000532560 CCDC171Q6TFL3 1326 aa17.96■□□□□ 0.46
CPSF1-208ENST00000532560 ADGRA2Q96PE1 1338 aa17.96■□□□□ 0.46
CPSF1-208ENST00000532560 MINDY4BA8MYZ0 360 aa17.95■□□□□ 0.46
CPSF1-208ENST00000532560 C19orf81C9J6K1 198 aa17.95■□□□□ 0.46
CPSF1-208ENST00000532560 USP17L10C9JJH3 530 aa17.95■□□□□ 0.46
CPSF1-208ENST00000532560 MFAP1P55081 439 aaKnown RBP17.95■□□□□ 0.46
CPSF1-208ENST00000532560 CCDC136Q96JN2 1154 aa17.95■□□□□ 0.46
CPSF1-208ENST00000532560 ZMYM6O95789 1325 aa17.95■□□□□ 0.46
CPSF1-208ENST00000532560 GREB1LQ9C091 1923 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-208ENST00000532560 MPHOSPH10O00566 681 aaKnown RBP17.94■□□□□ 0.46
CPSF1-208ENST00000532560 AKR1B1P15121 316 aa17.94■□□□□ 0.46
CPSF1-208ENST00000532560 SEPT2Q15019 361 aa17.94■□□□□ 0.46
CPSF1-208ENST00000532560 ALX1Q15699 326 aa17.94■□□□□ 0.46
CPSF1-208ENST00000532560 TREML2Q5T2D2 321 aa17.94■□□□□ 0.46
CPSF1-208ENST00000532560 VPS53Q5VIR6 699 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms