RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 FCGRTP55899 365 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 MTMR2Q13614 643 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 LCORLQ8N3X6 602 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 TRIM47Q96LD4 638 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 WDR18Q9BV38 432 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 TMOD4Q9NZQ9 345 aa16.09■□□□□ 0.17
VPS28-211ENST00000530790 MBD4O95243 580 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 HOXD10P28358 340 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 SHROOM1Q2M3G4 852 aaPredicted RBP16.08■□□□□ 0.16
VPS28-211ENST00000530790 SH3D19Q5HYK7 790 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 NBPF11Q86T75 865 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 SDR42E1Q8WUS8 393 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 ARMT1Q9H993 441 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 PCDHB15Q9Y5E8 787 aa16.08■□□□□ 0.16
VPS28-211ENST00000530790 GH2P01242 217 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 OSBPP22059 807 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 CTGFP29279 349 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 BACE1P56817 501 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 JAG1P78504 1218 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 ZSCAN25Q6NSZ9 544 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 TATDN1Q6P1N9 297 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 ZNF333Q96JL9 665 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 DCP1AQ9NPI6 582 aaPredicted RBP16.07■□□□□ 0.16
VPS28-211ENST00000530790 MCM9Q9NXL9 1143 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 SRRDQ9UH36 339 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 MYPNQ86TC9 1320 aa16.07■□□□□ 0.16
VPS28-211ENST00000530790 CENPFP49454 3210 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 USP17L10C9JJH3 530 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 PLCD1P51178 756 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 UBE3CQ15386 1083 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 FAM110CQ1W6H9 321 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 CERKLQ49MI3 558 aaPredicted RBP16.06■□□□□ 0.16
VPS28-211ENST00000530790 ANKRD13CQ8N6S4 541 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 RAET1EQ8TD07 263 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 CRBNQ96SW2 442 aa16.06■□□□□ 0.16
VPS28-211ENST00000530790 RBBP6Q7Z6E9 1792 aaKnown RBP16.05■□□□□ 0.16
VPS28-211ENST00000530790 C19orf81C9J6K1 198 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 SHMT1P34896 483 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 GCLCP48506 637 aaPredicted RBP16.05■□□□□ 0.16
VPS28-211ENST00000530790 IRX3P78415 501 aaPredicted RBP16.05■□□□□ 0.16
VPS28-211ENST00000530790 ABCB5Q2M3G0 1257 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 SLFNL1Q499Z3 407 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 TSHZ3Q63HK5 1081 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 SH3TC2Q8TF17 1288 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 DDRGK1Q96HY6 314 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 FEZ1Q99689 392 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 TMEM106CQ9BVX2 250 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 ASCC2Q9H1I8 757 aaPredicted RBP16.05■□□□□ 0.16
VPS28-211ENST00000530790 CABP5Q9NP86 173 aa16.05■□□□□ 0.16
VPS28-211ENST00000530790 MYH7P12883 1935 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 POTEFA5A3E0 1075 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 TNPO2O14787 897 aaKnown RBP16.04■□□□□ 0.16
VPS28-211ENST00000530790 PRKCZQ05513 592 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 GABPAQ06546 454 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 RAB3GAP1Q15042 981 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 AMOTL1Q8IY63 956 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 ATP8A2Q9NTI2 1148 aa16.04■□□□□ 0.16
VPS28-211ENST00000530790 TNRC18O15417 2968 aaPredicted RBP16.04■□□□□ 0.16
VPS28-211ENST00000530790 TTC41PQ6P2S7 1318 aa16.03■□□□□ 0.16
VPS28-211ENST00000530790 CHGBP05060 677 aa16.03■□□□□ 0.16
VPS28-211ENST00000530790 USP17L2Q6R6M4 530 aa16.03■□□□□ 0.16
VPS28-211ENST00000530790 KBTBD3Q8NAB2 608 aa16.03■□□□□ 0.16
VPS28-211ENST00000530790 ZBTB47Q9UFB7 747 aaPredicted RBP16.03■□□□□ 0.16
VPS28-211ENST00000530790 TAOK2Q9UL54 1235 aa16.03■□□□□ 0.16
VPS28-211ENST00000530790 ERC2O15083 957 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 PRKAB2O43741 272 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 MYCP01106 439 aaPredicted RBP16.02■□□□□ 0.16
VPS28-211ENST00000530790 CYP2D6P10635 497 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 HOXA7P31268 230 aaPredicted RBP16.02■□□□□ 0.16
VPS28-211ENST00000530790 GRK4P32298 578 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 USP14P54578 494 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 ZYXQ15942 572 aaKnown RBP16.02■□□□□ 0.16
VPS28-211ENST00000530790 SWAP70Q9UH65 585 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 SLC4A4Q9Y6R1 1079 aa16.02■□□□□ 0.16
VPS28-211ENST00000530790 MGAMO43451 1857 aa16.01■□□□□ 0.15
VPS28-211ENST00000530790 MPHOSPH10O00566 681 aaKnown RBP16.01■□□□□ 0.15
VPS28-211ENST00000530790 EVX2Q03828 476 aa16.01■□□□□ 0.15
VPS28-211ENST00000530790 LRRFIP1Q32MZ4 808 aaKnown RBP16.01■□□□□ 0.15
VPS28-211ENST00000530790 SLAIN1Q8ND83 568 aa16.01■□□□□ 0.15
VPS28-211ENST00000530790 COA7Q96BR5 231 aa16.01■□□□□ 0.15
VPS28-211ENST00000530790 C12orf42Q96LP6 360 aa16.01■□□□□ 0.15
VPS28-211ENST00000530790 PUS7LQ9H0K6 701 aaKnown RBP16.01■□□□□ 0.15
VPS28-211ENST00000530790 GLRX3O76003 335 aaKnown RBP16■□□□□ 0.15
VPS28-211ENST00000530790 ZFYP08048 801 aaPredicted RBP16■□□□□ 0.15
VPS28-211ENST00000530790 MX1P20591 662 aa16■□□□□ 0.15
VPS28-211ENST00000530790 HERVK_113P62684 666 aa16■□□□□ 0.15
VPS28-211ENST00000530790 SLC44A5Q8NCS7 719 aa16■□□□□ 0.15
VPS28-211ENST00000530790 GTF3C2Q8WUA4 911 aaPredicted RBP16■□□□□ 0.15
VPS28-211ENST00000530790 APPBP2Q92624 585 aa16■□□□□ 0.15
VPS28-211ENST00000530790 DYNLL2Q96FJ2 89 aa16■□□□□ 0.15
VPS28-211ENST00000530790 KIAA1683Q9H0B3 1180 aa16■□□□□ 0.15
VPS28-211ENST00000530790 EMILIN3Q9NT22 766 aa16■□□□□ 0.15
VPS28-211ENST00000530790 MORF4L1Q9UBU8 362 aa16■□□□□ 0.15
VPS28-211ENST00000530790 BIN2Q9UBW5 565 aaPredicted RBP16■□□□□ 0.15
VPS28-211ENST00000530790 GABRQQ9UN88 632 aa16■□□□□ 0.15
VPS28-211ENST00000530790 FLT3LGP49771 235 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 UBXN2AP68543 259 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 AAMPQ13685 434 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 SEPT2Q15019 361 aa15.99■□□□□ 0.15
VPS28-211ENST00000530790 C12orf60Q5U649 245 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms