RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 OSBPL1AQ9BXW6 950 aa9.37□□□□□ -0.91
PCF11-202ENST00000528336 KLHL3Q9UH77 587 aa9.37□□□□□ -0.91
PCF11-202ENST00000528336 ADAM30Q9UKF2 790 aa9.37□□□□□ -0.91
PCF11-202ENST00000528336 PRR36Q9H6K5 1346 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 ADAM23O75077 832 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 LRIG2O94898 1065 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 DUSP27Q5VZP5 1158 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 SLC6A19Q695T7 634 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 OGFOD3Q6PK18 319 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 ZNF765Q7L2R6 523 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 MCATQ8IVS2 390 aaKnown RBP9.36□□□□□ -0.91
PCF11-202ENST00000528336 FAM13CQ8NE31 585 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 PRDM10Q9NQV6 1147 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 GINM1Q9NU53 330 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 EFR3BQ9Y2G0 817 aa9.36□□□□□ -0.91
PCF11-202ENST00000528336 CHURC1-FNTBB4DL54 471 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 CST3P01034 146 aaPredicted RBP9.35□□□□□ -0.91
PCF11-202ENST00000528336 TMEM201Q5SNT2 666 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 FBXW10Q5XX13 1052 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 SLC51AQ86UW1 340 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 ZDHHC13Q8IUH4 622 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 MRPL41Q8IXM3 137 aaKnown RBP9.35□□□□□ -0.91
PCF11-202ENST00000528336 DUSP23Q9BVJ7 150 aa9.35□□□□□ -0.91
PCF11-202ENST00000528336 CAP2P40123 477 aa9.34□□□□□ -0.91
PCF11-202ENST00000528336 MLECQ14165 292 aa9.34□□□□□ -0.91
PCF11-202ENST00000528336 REXO1Q8N1G1 1221 aaKnown RBP9.34□□□□□ -0.91
PCF11-202ENST00000528336 MIPEPQ99797 713 aa9.34□□□□□ -0.91
PCF11-202ENST00000528336 EHMT1Q9H9B1 1298 aa9.34□□□□□ -0.91
PCF11-202ENST00000528336 DNAJA2O60884 412 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 GJA8P48165 433 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 YARSP54577 528 aaKnown RBP9.33□□□□□ -0.92
PCF11-202ENST00000528336 CYP27A1Q02318 531 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 FERD3LQ96RJ6 166 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 PPT2Q9UMR5 302 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 LEMD3Q9Y2U8 911 aa9.33□□□□□ -0.92
PCF11-202ENST00000528336 SLITRK5O94991 958 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 ATE1O95260 518 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 CYP27C1Q4G0S4 372 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 MFSD2AQ8NA29 543 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 RIN3Q8TB24 985 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 SPATA32Q96LK8 384 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 ANTXR1Q9H6X2 564 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 LRRC4CQ9HCJ2 640 aa9.32□□□□□ -0.92
PCF11-202ENST00000528336 SLC22A31A6NKX4 558 aa9.31□□□□□ -0.92
PCF11-202ENST00000528336 TGFB1P01137 390 aa9.31□□□□□ -0.92
PCF11-202ENST00000528336 NASPP49321 788 aaPredicted RBP9.31□□□□□ -0.92
PCF11-202ENST00000528336 GNL2Q13823 731 aaKnown RBP9.31□□□□□ -0.92
PCF11-202ENST00000528336 LETMD1Q6P1Q0 360 aa9.31□□□□□ -0.92
PCF11-202ENST00000528336 CCDC81Q6ZN84 652 aa9.31□□□□□ -0.92
PCF11-202ENST00000528336 RASGRP4Q8TDF6 673 aa9.31□□□□□ -0.92
PCF11-202ENST00000528336 METTL22Q9BUU2 404 aaPredicted RBP9.31□□□□□ -0.92
PCF11-202ENST00000528336 PRR19A6NJB7 356 aa9.3□□□□□ -0.92
PCF11-202ENST00000528336 ARSHQ5FYA8 562 aa9.3□□□□□ -0.92
PCF11-202ENST00000528336 CDH24Q86UP0 819 aa9.3□□□□□ -0.92
PCF11-202ENST00000528336 VPS37DQ86XT2 251 aa9.3□□□□□ -0.92
PCF11-202ENST00000528336 PIM2Q9P1W9 311 aa9.3□□□□□ -0.92
PCF11-202ENST00000528336 TPX2Q9ULW0 747 aaKnown RBP9.3□□□□□ -0.92
PCF11-202ENST00000528336 OVOS1Q6IE37 1185 aa9.29□□□□□ -0.92
PCF11-202ENST00000528336 PHACTR4Q8IZ21 702 aa9.29□□□□□ -0.92
PCF11-202ENST00000528336 KIF2CQ99661 725 aa9.29□□□□□ -0.92
PCF11-202ENST00000528336 GMIPQ9P107 970 aa9.29□□□□□ -0.92
PCF11-202ENST00000528336 RBAK-RBAKDNI3L0D1 243 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 CYP26A1O43174 497 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 EOMESO95936 686 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 SOX9P48436 509 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 COL9A2Q14055 689 aaPredicted RBP9.28□□□□□ -0.92
PCF11-202ENST00000528336 SLFN12Q8IYM2 578 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 FAM181AQ8N9Y4 354 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 BAHD1Q8TBE0 780 aaPredicted RBP9.28□□□□□ -0.92
PCF11-202ENST00000528336 CPLX3Q8WVH0 158 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 ATG4CQ96DT6 458 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 HEXIM2Q96MH2 286 aaKnown RBP9.28□□□□□ -0.92
PCF11-202ENST00000528336 ZNRF3Q9ULT6 936 aa9.28□□□□□ -0.92
PCF11-202ENST00000528336 NISCHQ9Y2I1 1504 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 RAG1P15918 1043 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 HOXA10P31260 410 aaPredicted RBP9.27□□□□□ -0.93
PCF11-202ENST00000528336 LRRFIP1Q32MZ4 808 aaKnown RBP9.27□□□□□ -0.93
PCF11-202ENST00000528336 ARHGAP27Q6ZUM4 889 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 CYB5D2Q8WUJ1 264 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 TMEM40Q8WWA1 233 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 SEC16BQ96JE7 1060 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 CRBNQ96SW2 442 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 TINF2Q9BSI4 451 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 CNTNAP4Q9C0A0 1308 aa9.27□□□□□ -0.93
PCF11-202ENST00000528336 IMPDH2P12268 514 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 ATF4P18848 351 aaPredicted RBP9.26□□□□□ -0.93
PCF11-202ENST00000528336 ZC3H6P61129 1189 aaKnown RBP9.26□□□□□ -0.93
PCF11-202ENST00000528336 FAM214BQ7L5A3 538 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 NLRC3Q7RTR2 1065 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 CCDC74BQ96LY2 380 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 PRDM5Q9NQX1 630 aaPredicted RBP9.26□□□□□ -0.93
PCF11-202ENST00000528336 GTF2IRD1Q9UHL9 959 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 RNF112Q9ULX5 631 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 CEP131Q9UPN4 1083 aa9.26□□□□□ -0.93
PCF11-202ENST00000528336 FOSL1P15407 271 aa9.25□□□□□ -0.93
PCF11-202ENST00000528336 POLR2BP30876 1174 aaKnown RBP9.25□□□□□ -0.93
PCF11-202ENST00000528336 SSTR4P31391 388 aa9.25□□□□□ -0.93
PCF11-202ENST00000528336 DNAJA1P31689 397 aaKnown RBP9.25□□□□□ -0.93
PCF11-202ENST00000528336 GBP1P32455 592 aa9.25□□□□□ -0.93
PCF11-202ENST00000528336 NAALADL2Q58DX5 795 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms