RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CYP2D7A0A087X1C5 515 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 PEX10O60683 326 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 USP5P45974 858 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 HMGCS2P54868 508 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 LACTBP83111 547 aaPredicted RBP12.91□□□□□ -0.34
CD44-227ENST00000528086 PKN2Q16513 984 aaKnown RBP12.91□□□□□ -0.34
CD44-227ENST00000528086 KBTBD3Q8NAB2 608 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 ZNF280CQ8ND82 737 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 OSBP2Q969R2 916 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 ERO1AQ96HE7 468 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 TRIM47Q96LD4 638 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 PTPN22Q9Y2R2 807 aa12.91□□□□□ -0.34
CD44-227ENST00000528086 PLXNB2O15031 1838 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 MYH8P13535 1937 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 RLFQ13129 1914 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 USP17L5A8MUK1 530 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 ECM2O94769 699 aaPredicted RBP12.9□□□□□ -0.34
CD44-227ENST00000528086 GH2P01242 217 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 SOX10P56693 466 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 GADL1Q6ZQY3 521 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 SIAH1Q8IUQ4 282 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 DYNLL2Q96FJ2 89 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 STRBPQ96SI9 672 aaKnown RBP12.9□□□□□ -0.34
CD44-227ENST00000528086 EFCC1Q9HA90 598 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 EMILIN3Q9NT22 766 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 SERPINB13Q9UIV8 391 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 AGTPBP1Q9UPW5 1226 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 SLC45A1Q9Y2W3 748 aa12.9□□□□□ -0.34
CD44-227ENST00000528086 SUPT16HQ9Y5B9 1047 aaKnown RBP12.9□□□□□ -0.34
CD44-227ENST00000528086 GREB1LQ9C091 1923 aaPredicted RBP12.9□□□□□ -0.35
CD44-227ENST00000528086 FOXP2O15409 715 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 MTMR2Q13614 643 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 FASTKD5Q7L8L6 764 aaKnown RBP12.89□□□□□ -0.35
CD44-227ENST00000528086 CERS3Q8IU89 383 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 SMC5Q8IY18 1101 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 ACER1Q8TDN7 264 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 SEC62Q99442 399 aaKnown RBP12.89□□□□□ -0.35
CD44-227ENST00000528086 CRNKL1Q9BZJ0 848 aaKnown RBP12.89□□□□□ -0.35
CD44-227ENST00000528086 MCM9Q9NXL9 1143 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 PTCH2Q9Y6C5 1203 aa12.89□□□□□ -0.35
CD44-227ENST00000528086 RBBP6Q7Z6E9 1792 aaKnown RBP12.89□□□□□ -0.35
CD44-227ENST00000528086 GSG1L2A8MUP6 293 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 M0R2C6 588 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 HLA-DOAP06340 250 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 ASNSP08243 561 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 BACE1P56817 501 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 KIAA1755Q5JYT7 1200 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 ANKRD45Q5TZF3 282 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 C12orf60Q5U649 245 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 CRACR2BQ8N4Y2 399 aaPredicted RBP12.88□□□□□ -0.35
CD44-227ENST00000528086 PROCA1Q8NCQ7 364 aaPredicted RBP12.88□□□□□ -0.35
CD44-227ENST00000528086 ARMC5Q96C12 935 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 EPB41L4AQ9HCS5 686 aaPredicted RBP12.88□□□□□ -0.35
CD44-227ENST00000528086 STAP2Q9UGK3 403 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 TTC41PQ6P2S7 1318 aa12.88□□□□□ -0.35
CD44-227ENST00000528086 A0A1W2PRG0 241 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 USP17L12C9JPN9 530 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 USP17L21D6R901 530 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 MX1P20591 662 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 OSBPP22059 807 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 CTR9Q6PD62 1173 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 TTC6Q86TZ1 520 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 CLEC10AQ8IUN9 316 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 PARK7Q99497 189 aaKnown RBP12.87□□□□□ -0.35
CD44-227ENST00000528086 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
CD44-227ENST00000528086 ASCC2Q9H1I8 757 aaPredicted RBP12.87□□□□□ -0.35
CD44-227ENST00000528086 PARP14Q460N5 1801 aa12.87□□□□□ -0.35
CD44-227ENST00000528086 POTEFA5A3E0 1075 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 RNF113AO15541 343 aaKnown RBP12.86□□□□□ -0.35
CD44-227ENST00000528086 HOXA7P31268 230 aaPredicted RBP12.86□□□□□ -0.35
CD44-227ENST00000528086 PSMC4P43686 418 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 PDE1AP54750 535 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 SEPT2Q15019 361 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 CERKLQ49MI3 558 aaPredicted RBP12.86□□□□□ -0.35
CD44-227ENST00000528086 APPBP2Q92624 585 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 P2RX7Q99572 595 aaKnown RBP12.86□□□□□ -0.35
CD44-227ENST00000528086 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.86□□□□□ -0.35
CD44-227ENST00000528086 TXNRD2Q9NNW7 524 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 ATP8A2Q9NTI2 1148 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 GINM1Q9NU53 330 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 GABRQQ9UN88 632 aa12.86□□□□□ -0.35
CD44-227ENST00000528086 USP17L10C9JJH3 530 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 GLRX3O76003 335 aaKnown RBP12.85□□□□□ -0.35
CD44-227ENST00000528086 POLR3DP05423 398 aaPredicted RBP12.85□□□□□ -0.35
CD44-227ENST00000528086 AKR1B1P15121 316 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 ABCB5Q2M3G0 1257 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 GCC1Q96CN9 775 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 ZNF333Q96JL9 665 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 C12orf42Q96LP6 360 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 TBC1D2Q9BYX2 928 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 LNPKQ9C0E8 428 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 SRRDQ9UH36 339 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 TACC3Q9Y6A5 838 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 SLC4A4Q9Y6R1 1079 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 PDE4DIPQ5VU43 2346 aa12.85□□□□□ -0.35
CD44-227ENST00000528086 GPAA1O43292 621 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 CDK8P49336 464 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 IRX6P78412 446 aaPredicted RBP12.84□□□□□ -0.35
CD44-227ENST00000528086 Q3C1V9 767 aa12.84□□□□□ -0.35
CD44-227ENST00000528086 ZMYM1Q5SVZ6 1142 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms