RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SPDYE2Q495Y8 402 aa22.08■■□□□ 1.13
VPS28-207ENST00000526977 MKNK2Q9HBH9 465 aa22.08■■□□□ 1.13
VPS28-207ENST00000526977 TAOK2Q9UL54 1235 aa22.08■■□□□ 1.13
VPS28-207ENST00000526977 LAMB1P07942 1786 aa22.08■■□□□ 1.12
VPS28-207ENST00000526977 H7C1D1 291 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 WNT10BO00744 389 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 RANBP6O60518 1105 aaKnown RBP22.07■■□□□ 1.12
VPS28-207ENST00000526977 CTDNEP1O95476 244 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 CACNB3P54284 484 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 CCT2P78371 535 aaKnown RBP22.07■■□□□ 1.12
VPS28-207ENST00000526977 C16orf86Q6ZW13 317 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 GAS2L3Q86XJ1 694 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 TMEM87AQ8NBN3 555 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 ANGEL1Q9UNK9 670 aaKnown RBP22.07■■□□□ 1.12
VPS28-207ENST00000526977 ECM29Q5VYK3 1845 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 PRDM1O75626 825 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 CDC37L1Q7L3B6 337 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 NSUN7Q8NE18 718 aaKnown RBP22.07■■□□□ 1.12
VPS28-207ENST00000526977 NKX2-3Q8TAU0 364 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 DYNLL2Q96FJ2 89 aa22.07■■□□□ 1.12
VPS28-207ENST00000526977 DDX60LQ5H9U9 1706 aaKnown RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 GADD45BO75293 160 aaPredicted RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 MBD3O95983 291 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 TCP10Q12799 353 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 IQCA1Q86XH1 822 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 IGDCC4Q8TDY8 1250 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 MYH1P12882 1939 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 ERICH2A1L162 156 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 LIFRP42702 1097 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 ZNF444Q8N0Y2 327 aaPredicted RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 TMTC2Q8N394 836 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 DDX11Q96FC9 970 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 UBAC1Q9BSL1 405 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 EHD4Q9H223 541 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 NCOA5Q9HCD5 579 aaKnown RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 PI4KBQ9UBF8 816 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 SERPINB13Q9UIV8 391 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 BRPF3Q9ULD4 1205 aa22.06■■□□□ 1.12
VPS28-207ENST00000526977 ISY1Q9ULR0 285 aaKnown RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 NAP1L2Q9ULW6 460 aaPredicted RBP22.06■■□□□ 1.12
VPS28-207ENST00000526977 SHTN1A0MZ66 631 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 IFIT3O14879 490 aaKnown RBP22.05■■□□□ 1.12
VPS28-207ENST00000526977 CDK8P49336 464 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 DNM1Q05193 864 aaKnown RBP22.05■■□□□ 1.12
VPS28-207ENST00000526977 NBPF9Q3BBW0 867 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 ZFPM1Q8IX07 1006 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 GPRC5DQ9NZD1 345 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 RBM27Q9P2N5 1060 aaKnown RBP22.05■■□□□ 1.12
VPS28-207ENST00000526977 SWAP70Q9UH65 585 aa22.05■■□□□ 1.12
VPS28-207ENST00000526977 CLRN2A0PK11 232 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 SH2B2O14492 632 aaPredicted RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 XRCC6P12956 609 aaKnown RBP eCLIP22.04■■□□□ 1.127e-6■□□□□ 8.8
VPS28-207ENST00000526977 GABPAQ06546 454 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 TMEM67Q5HYA8 995 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 ZSCAN29Q8IWY8 852 aaPredicted RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 TSPY2A6NKD2 308 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 ZSCAN23Q3MJ62 389 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 RBM26Q5T8P6 1007 aaKnown RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 DPY19L2Q6NUT2 758 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 FAM83AQ86UY5 434 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 FOXP4Q8IVH2 680 aaPredicted RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 FAM151AQ8WW52 585 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 CHMP4CQ96CF2 233 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 COL2A1P02458 1487 aaPredicted RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 TCHHQ07283 1943 aa22.04■■□□□ 1.12
VPS28-207ENST00000526977 ZC3H4Q9UPT8 1303 aaKnown RBP22.04■■□□□ 1.12
VPS28-207ENST00000526977 ATRNL1Q5VV63 1379 aa22.03■■□□□ 1.12
VPS28-207ENST00000526977 TCP10L2B9ZVM9 353 aa22.03■■□□□ 1.12
VPS28-207ENST00000526977 SAMD7Q7Z3H4 446 aa22.03■■□□□ 1.12
VPS28-207ENST00000526977 FERMT3Q86UX7 667 aa22.03■■□□□ 1.12
VPS28-207ENST00000526977 PTPDC1A2A3K4 754 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 DDTLA6NHG4 134 aaPredicted RBP22.02■■□□□ 1.12
VPS28-207ENST00000526977 ZNF445P59923 1031 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 HMGN5P82970 282 aaKnown RBP22.02■■□□□ 1.12
VPS28-207ENST00000526977 SGMS1Q86VZ5 419 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 FAM184AQ8NB25 1140 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 ZSCAN10Q96SZ4 725 aaPredicted RBP22.02■■□□□ 1.12
VPS28-207ENST00000526977 VEZTQ9HBM0 779 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 TMEM63CQ9P1W3 806 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 KLF18A0A0U1RQI7 1052 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 DDNO94850 711 aaPredicted RBP22.02■■□□□ 1.12
VPS28-207ENST00000526977 MRE11P49959 708 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 TFAP4Q01664 338 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 WTAPQ15007 396 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 KIF4BQ2VIQ3 1234 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 CCDC178Q5BJE1 867 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 LY9Q9HBG7 655 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 HPS5Q9UPZ3 1129 aa22.02■■□□□ 1.12
VPS28-207ENST00000526977 RASA1P20936 1047 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TNNI2P48788 182 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TNFAIP1Q13829 316 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TBC1D10BQ4KMP7 808 aaPredicted RBP22.01■■□□□ 1.11
VPS28-207ENST00000526977 SH3BP5LQ7L8J4 393 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 SLC44A5Q8NCS7 719 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 ZKSCAN3Q9BRR0 538 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 EGFRP00533 1210 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TSPY3P0CV98 308 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 TSPY8P0CW00 308 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 FAM47AQ5JRC9 791 aa22.01■■□□□ 1.11
VPS28-207ENST00000526977 GRPEL1Q9HAV7 217 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms