RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 CAMKK2Q96RR4 588 aa6.87□□□□□ -1.31
USP47-204ENST00000525078 MRPL4Q9BYD3 311 aaKnown RBP6.87□□□□□ -1.31
USP47-204ENST00000525078 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.87□□□□□ -1.31
USP47-204ENST00000525078 PUS7LQ9H0K6 701 aaKnown RBP6.87□□□□□ -1.31
USP47-204ENST00000525078 ZFAND3Q9H8U3 227 aa6.87□□□□□ -1.31
USP47-204ENST00000525078 LUC7LQ9NQ29 371 aaKnown RBP6.87□□□□□ -1.31
USP47-204ENST00000525078 CASS4Q9NQ75 786 aa6.87□□□□□ -1.31
USP47-204ENST00000525078 TRHDEQ9UKU6 1024 aa6.87□□□□□ -1.31
USP47-204ENST00000525078 SPATA31C2B4DYI2 1134 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 WFS1O76024 890 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 NEK3P51956 506 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 SLC7A5Q01650 507 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 TCIRG1Q13488 830 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 ZYXQ15942 572 aaKnown RBP6.86□□□□□ -1.31
USP47-204ENST00000525078 SULF2Q8IWU5 870 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 SPICE1Q8N0Z3 855 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 USP7Q93009 1102 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 HHIPQ96QV1 700 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 INSM2Q96T92 566 aaPredicted RBP6.86□□□□□ -1.31
USP47-204ENST00000525078 ZCCHC2Q9C0B9 1178 aaKnown RBP6.86□□□□□ -1.31
USP47-204ENST00000525078 BHLHE41Q9C0J9 482 aaPredicted RBP6.86□□□□□ -1.31
USP47-204ENST00000525078 ZHX3Q9H4I2 956 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 PTPRHQ9HD43 1115 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 OBP2AQ9NY56 170 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 GMPR2Q9P2T1 348 aaKnown RBP6.86□□□□□ -1.31
USP47-204ENST00000525078 IP6K2Q9UHH9 426 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 KCNH4Q9UQ05 1017 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 SPEF1Q9Y4P9 236 aa6.86□□□□□ -1.31
USP47-204ENST00000525078 LTBP3Q9NS15 1303 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 MEIS3P2A8K0S8 358 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 WNT7AO00755 349 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 RFPL1O75677 317 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 U2AF1L5P0DN76 240 aaPredicted RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 MSX1P28360 303 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 WDR4P57081 412 aaKnown RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 U2AF1Q01081 240 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP47-204ENST00000525078 HSP90AA2PQ14568 343 aaPredicted RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 DHCR24Q15392 516 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 GNPTABQ3T906 1256 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 ACBD5Q5T8D3 534 aaPredicted RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 COL13A1Q5TAT6 717 aaPredicted RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 PKN3Q6P5Z2 889 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 PRICKLE2Q7Z3G6 844 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 SCUBE1Q8IWY4 988 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 TAB3Q8N5C8 712 aaPredicted RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 CNTD1Q8N815 330 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 GRIN3AQ8TCU5 1115 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 NXPE3Q969Y0 559 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 TTC1Q99614 292 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 EMILIN2Q9BXX0 1053 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 PRDM11Q9NQV5 511 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 MAP3K20Q9NYL2 800 aaKnown RBP6.85□□□□□ -1.31
USP47-204ENST00000525078 LRP2BPQ9P2M1 347 aa6.85□□□□□ -1.31
USP47-204ENST00000525078 A0A1B0GTH6 734 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 C11orf95C9JLR9 678 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 PDE2AO00408 941 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 AXIN1O15169 862 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 HTR3BO95264 441 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 TRIM27P14373 513 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 TRAPPC10P48553 1259 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 PPM1FP49593 454 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 SMCPP49901 116 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 PLAURQ03405 335 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 PCBP1Q15365 356 aaKnown RBP eCLIP6.84□□□□□ -1.31
USP47-204ENST00000525078 TMEM95Q3KNT9 176 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 SYDE2Q5VT97 1194 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 YOD1Q5VVQ6 348 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 ANO1Q5XXA6 986 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 CXorf57Q6NSI4 855 aaKnown RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 PCGF5Q86SE9 256 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 CYP4X1Q8N118 509 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 CEP120Q8N960 986 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 TMEM102Q8N9M5 508 aaPredicted RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 PPP1R14AQ96A00 147 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 GAL3ST3Q96A11 431 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 TIFAQ96CG3 184 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 NSUN5Q96P11 429 aaKnown RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 AARSD1Q9BTE6 412 aaKnown RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 RHOBTB2Q9BYZ6 727 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 TIMMDC1Q9NPL8 285 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 ARHGEF4Q9NR80 690 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 PUF60Q9UHX1 559 aaKnown RBP6.84□□□□□ -1.31
USP47-204ENST00000525078 LZTS1Q9Y250 596 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 RPS6KL1Q9Y6S9 549 aa6.84□□□□□ -1.31
USP47-204ENST00000525078 A0A1W2PQU0 124 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 GABRDO14764 452 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 OPA1O60313 960 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 KPNA6O60684 536 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 NPTXRO95502 500 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 NAT2P11245 290 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 CCND1P24385 295 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 ARNTP27540 789 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 SUMO1P63165 101 aaKnown RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 PTPN21Q16825 1174 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 HDGFL2Q7Z4V5 671 aaPredicted RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 SMAP1Q8IYB5 467 aaPredicted RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 ENAHQ8N8S7 591 aaPredicted RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 COG1Q8WTW3 980 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 MTA3Q9BTC8 594 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 GSX2Q9BZM3 304 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms