RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 C16orf86Q6ZW13 317 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 CERS3Q8IU89 383 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 ACER1Q8TDN7 264 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 RUFY2Q8WXA3 655 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 HOOK2Q96ED9 719 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 ZKSCAN3Q9BRR0 538 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 LSG1Q9H089 658 aaKnown RBP5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 MKNK2Q9HBH9 465 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 PICK1Q9NRD5 415 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 HERC5Q9UII4 1024 aaKnown RBP5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 ZBTB21Q9ULJ3 1066 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 MTMR7Q9Y216 660 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 RBM8AQ9Y5S9 174 aaKnown RBP5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 NEDD4P46934 1319 aa5.48□□□□□ -1.53
CHMP4A-202ENST00000524955 POLR2AP24928 1970 aaKnown RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 PAPPA2Q9BXP8 1791 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 COL2A1P02458 1487 aaPredicted RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 SIPA1L1O43166 1804 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 ECM29Q5VYK3 1845 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CCL15-CCL14A0A0B4J2E2 113 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 A0A1W2PRG0 241 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 B4E1Z4 1266 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 IGF2BP3O00425 579 aaKnown RBP eCLIP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 ZNF213O14771 459 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 RANBP6O60518 1105 aaKnown RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 PEX10O60683 326 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CTNND1O60716 968 aaKnown RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 TRPA1O75762 1119 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 SEC24BO95487 1268 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 TBC1D8O95759 1140 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CYP21A2P08686 494 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 HMGCS2P54868 508 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 MFAP1P55081 439 aaKnown RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 TFAP4Q01664 338 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 MAP3K10Q02779 954 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 MTMR2Q13614 643 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CCL15Q16663 113 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 KIAA1755Q5JYT7 1200 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 GIMAP6Q6P9H5 292 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 TMED8Q6PL24 325 aaPredicted RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 KIAA1211Q6ZU35 1233 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 STOX1Q6ZVD7 989 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 RASGRP2Q7LDG7 609 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CHST3Q7LGC8 479 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 METTL16Q86W50 562 aaKnown RBP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 ERO1BQ86YB8 467 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 SIAH1Q8IUQ4 282 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 SPICE1Q8N0Z3 855 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 BRI3BPQ8WY22 251 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 CCDC102AQ96A19 550 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 MS4A4AQ96JQ5 239 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 PTPN18Q99952 460 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 DSCC1Q9BVC3 393 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 EHD4Q9H223 541 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 R3HDMLQ9H3Y0 253 aa5.47□□□□□ -1.53
CHMP4A-202ENST00000524955 DDX60LQ5H9U9 1706 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 NAV1Q8NEY1 1877 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 TSPY2A6NKD2 308 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 USP17L5A8MUK1 530 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 BTBD19C9JJ37 291 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 SLC27A2O14975 620 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 KDM4AO75164 1064 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 ASNSP08243 561 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 TSPY3P0CV98 308 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 TSPY8P0CW00 308 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 EEF2P13639 858 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 CPA1P15085 419 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 PPATQ06203 517 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 NOGQ13253 232 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 PPIL2Q13356 520 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 ALX1Q15699 326 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 IMMTQ16891 758 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 NOL9Q5SY16 702 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 TREML2Q5T2D2 321 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 CASC1Q6TDU7 716 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 CYB5R4Q7L1T6 521 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 ZNF444Q8N0Y2 327 aaPredicted RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 LRRC47Q8N1G4 583 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 FAM43AQ8N2R8 423 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 MAP4K1Q92918 833 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 HHIPL1Q96JK4 782 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 TCEANC2Q96MN5 208 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 NUP88Q99567 741 aaPredicted RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 FEZ1Q99689 392 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 CABP5Q9NP86 173 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 GPHNQ9NQX3 736 aaPredicted RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 CLIP2Q9UDT6 1046 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 SWAP70Q9UH65 585 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 ISY1Q9ULR0 285 aaKnown RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 AFG3L2Q9Y4W6 797 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 U3KPZ7 1027 aaPredicted RBP5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 RAD50Q92878 1312 aa5.46□□□□□ -1.54
CHMP4A-202ENST00000524955 ROBO3Q96MS0 1386 aa5.45□□□□□ -1.54
CHMP4A-202ENST00000524955 E7EWF7 191 aa5.45□□□□□ -1.54
CHMP4A-202ENST00000524955 PDHXO00330 501 aa5.45□□□□□ -1.54
CHMP4A-202ENST00000524955 FOXN1O15353 648 aa5.45□□□□□ -1.54
CHMP4A-202ENST00000524955 SLC3A2P08195 630 aaKnown RBP5.45□□□□□ -1.54
CHMP4A-202ENST00000524955 HSPA1AP0DMV8 641 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms