RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 UBP1Q9NZI7 540 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 CYP8B1Q9UNU6 501 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 SLC5A6Q9Y289 635 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 PCDHB5Q9Y5E4 795 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 NASPP49321 788 aaPredicted RBP8.92□□□□□ -0.98
SKP1-213ENST00000524288 CAMK2GQ13555 558 aaPredicted RBP8.92□□□□□ -0.98
SKP1-213ENST00000524288 LLGL2Q6P1M3 1020 aa8.92□□□□□ -0.98
SKP1-213ENST00000524288 DPH6Q7L8W6 267 aa8.92□□□□□ -0.98
SKP1-213ENST00000524288 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.92□□□□□ -0.98
SKP1-213ENST00000524288 NETO1Q8TDF5 533 aa8.92□□□□□ -0.98
SKP1-213ENST00000524288 BCL7CQ8WUZ0 217 aaPredicted RBP8.92□□□□□ -0.98
SKP1-213ENST00000524288 SSU72Q9NP77 194 aaKnown RBP8.92□□□□□ -0.98
SKP1-213ENST00000524288 TLR3O15455 904 aaKnown RBP8.91□□□□□ -0.98
SKP1-213ENST00000524288 RLBP1P12271 317 aa8.91□□□□□ -0.98
SKP1-213ENST00000524288 GARTP22102 1010 aa8.91□□□□□ -0.98
SKP1-213ENST00000524288 DUSP23Q9BVJ7 150 aa8.91□□□□□ -0.98
SKP1-213ENST00000524288 GOLGA2P5Q9HBQ8 144 aa8.91□□□□□ -0.98
SKP1-213ENST00000524288 EFR3BQ9Y2G0 817 aa8.91□□□□□ -0.98
SKP1-213ENST00000524288 LMNB1P20700 586 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 RING1Q06587 406 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 SEPT6Q14141 434 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 BNC2Q6ZN30 1099 aaPredicted RBP8.9□□□□□ -0.98
SKP1-213ENST00000524288 AGMOQ6ZNB7 445 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 RASGRP4Q8TDF6 673 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 JARID2Q92833 1246 aaPredicted RBP8.9□□□□□ -0.98
SKP1-213ENST00000524288 LNPKQ9C0E8 428 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 GINM1Q9NU53 330 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 RNF114Q9Y508 228 aa8.9□□□□□ -0.98
SKP1-213ENST00000524288 SUPT16HQ9Y5B9 1047 aaKnown RBP8.9□□□□□ -0.98
SKP1-213ENST00000524288 FANCGO15287 622 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 CRKP46108 304 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 LMNB2Q03252 620 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 KCT2Q8NC54 265 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 FBXO27Q8NI29 283 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 GRIN3AQ8TCU5 1115 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 MRVI1Q9Y6F6 885 aa8.89□□□□□ -0.99
SKP1-213ENST00000524288 STK10O94804 968 aaKnown RBP8.88□□□□□ -0.99
SKP1-213ENST00000524288 SSBP05455 408 aaKnown RBP eCLIP8.88□□□□□ -0.99
SKP1-213ENST00000524288 JUNBP17275 347 aaPredicted RBP8.88□□□□□ -0.99
SKP1-213ENST00000524288 IFI16Q16666 785 aaKnown RBP8.88□□□□□ -0.99
SKP1-213ENST00000524288 PLD6Q8N2A8 252 aaKnown RBP8.88□□□□□ -0.99
SKP1-213ENST00000524288 PICK1Q9NRD5 415 aa8.88□□□□□ -0.99
SKP1-213ENST00000524288 VAV3Q9UKW4 847 aa8.88□□□□□ -0.99
SKP1-213ENST00000524288 F13A1P00488 732 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 NTF4P34130 210 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 PRKCQQ04759 706 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 APOBRQ0VD83 1088 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 PPM1JQ5JR12 505 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 MPRIPQ6WCQ1 1025 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 CCDC81Q6ZN84 652 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 ARHGAP27Q6ZUM4 889 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 TOP6BLQ8N6T0 577 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 NT5C1AQ9BXI3 368 aa8.87□□□□□ -0.99
SKP1-213ENST00000524288 SMARCA5O60264 1052 aaPredicted RBP8.86□□□□□ -0.99
SKP1-213ENST00000524288 GREM1O60565 184 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 LEFTY1O75610 366 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 CEACAM5P06731 702 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 ITGB5P18084 799 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 SEZ6Q53EL9 994 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 ZBTB37Q5TC79 503 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 FAM181AQ8N9Y4 354 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 NKD1Q969G9 470 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 ASIC4Q96FT7 647 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 MIR1-1HGQ9H1L0 117 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 GTF2IRD1Q9UHL9 959 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 PCDHA4Q9UN74 947 aa8.86□□□□□ -0.99
SKP1-213ENST00000524288 TMEM265A0A087WTH1 108 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 DCDC2CA8MYV0 355 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 IGF2BP3O00425 579 aaKnown RBP eCLIP8.85□□□□□ -0.99
SKP1-213ENST00000524288 OXCT1P55809 520 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 RPS26P62854 115 aaKnown RBP8.85□□□□□ -0.99
SKP1-213ENST00000524288 WFDC3Q8IUB2 231 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 ELMO3Q96BJ8 720 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 KCNQ5Q9NR82 932 aa8.85□□□□□ -0.99
SKP1-213ENST00000524288 PLCL1Q15111 1095 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 CCDC144BQ3MJ40 725 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 FAM196AQ6ZSG2 479 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 CDC37L1Q7L3B6 337 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 SPRED2Q7Z698 418 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 ARMC5Q96C12 935 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 SEC16BQ96JE7 1060 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 HRASLS5Q96KN8 279 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 ZNF408Q9H9D4 720 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 PRDM10Q9NQV6 1147 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 SNX11Q9Y5W9 270 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 CSADQ9Y600 493 aa8.84□□□□□ -0.99
SKP1-213ENST00000524288 FUT4P22083 530 aa8.83□□□□□ -1
SKP1-213ENST00000524288 MCM4P33991 863 aa8.83□□□□□ -1
SKP1-213ENST00000524288 ETFBP38117 255 aa8.83□□□□□ -1
SKP1-213ENST00000524288 PTPN11Q06124 597 aaPredicted RBP8.83□□□□□ -1
SKP1-213ENST00000524288 ZNF574Q6ZN55 896 aaPredicted RBP8.83□□□□□ -1
SKP1-213ENST00000524288 HDXQ7Z353 690 aa8.83□□□□□ -1
SKP1-213ENST00000524288 C12orf40Q86WS4 652 aa8.83□□□□□ -1
SKP1-213ENST00000524288 KRTAP19-1Q8IUB9 90 aa8.83□□□□□ -1
SKP1-213ENST00000524288 FAM177A1Q8N128 213 aaPredicted RBP8.83□□□□□ -1
SKP1-213ENST00000524288 CPLX3Q8WVH0 158 aa8.83□□□□□ -1
SKP1-213ENST00000524288 ANAPC16Q96DE5 110 aa8.83□□□□□ -1
SKP1-213ENST00000524288 TNKS2Q9H2K2 1166 aa8.83□□□□□ -1
SKP1-213ENST00000524288 PPT2Q9UMR5 302 aa8.83□□□□□ -1
SKP1-213ENST00000524288 LCE3BQ5TA77 95 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms