RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 MAGEB6P1A0A0J9YX57 407 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 GOLIM4O00461 696 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 GDF11O95390 407 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 PDE6AP16499 860 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 EN2P19622 333 aaPredicted RBP21.21■□□□□ 0.99
DDX41-217ENST00000515562 GRK4P32298 578 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 GCLCP48506 637 aaPredicted RBP21.21■□□□□ 0.99
DDX41-217ENST00000515562 BACE1P56817 501 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 TTC6Q86TZ1 520 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 ANKRD13CQ8N6S4 541 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 RIOK1Q9BRS2 568 aaKnown RBP21.21■□□□□ 0.99
DDX41-217ENST00000515562 TMOD4Q9NZQ9 345 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 SERPINB13Q9UIV8 391 aa21.21■□□□□ 0.99
DDX41-217ENST00000515562 C19orf81C9J6K1 198 aa21.2■□□□□ 0.98
DDX41-217ENST00000515562 TNPO2O14787 897 aaKnown RBP21.2■□□□□ 0.98
DDX41-217ENST00000515562 SLAIN1Q8ND83 568 aa21.2■□□□□ 0.98
DDX41-217ENST00000515562 USP17L10C9JJH3 530 aa21.19■□□□□ 0.98
DDX41-217ENST00000515562 MYCP01106 439 aaPredicted RBP21.19■□□□□ 0.98
DDX41-217ENST00000515562 JAG1P78504 1218 aa21.19■□□□□ 0.98
DDX41-217ENST00000515562 CRNKL1Q9BZJ0 848 aaKnown RBP21.19■□□□□ 0.98
DDX41-217ENST00000515562 LRRCC1Q9C099 1032 aa21.19■□□□□ 0.98
DDX41-217ENST00000515562 BCL11AQ9H165 835 aa21.19■□□□□ 0.98
DDX41-217ENST00000515562 ASCC2Q9H1I8 757 aaPredicted RBP21.19■□□□□ 0.98
DDX41-217ENST00000515562 ATP5JP18859 108 aa21.18■□□□□ 0.98
DDX41-217ENST00000515562 TATDN1Q6P1N9 297 aa21.18■□□□□ 0.98
DDX41-217ENST00000515562 PAG1Q9NWQ8 432 aa21.18■□□□□ 0.98
DDX41-217ENST00000515562 ZNF532Q9HCE3 1301 aa21.18■□□□□ 0.98
DDX41-217ENST00000515562 MKI67P46013 3256 aaKnown RBP21.17■□□□□ 0.98
DDX41-217ENST00000515562 UBXN2AP68543 259 aa21.17■□□□□ 0.98
DDX41-217ENST00000515562 IRX3P78415 501 aaPredicted RBP21.17■□□□□ 0.98
DDX41-217ENST00000515562 SHROOM1Q2M3G4 852 aaPredicted RBP21.17■□□□□ 0.98
DDX41-217ENST00000515562 COA7Q96BR5 231 aa21.17■□□□□ 0.98
DDX41-217ENST00000515562 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.17■□□□□ 0.982e-6■□□□□ 10.4
DDX41-217ENST00000515562 GABRQQ9UN88 632 aa21.17■□□□□ 0.98
DDX41-217ENST00000515562 TCRBV5S4A2TA0A5A2 114 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 GH2P01242 217 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 HOXA7P31268 230 aaPredicted RBP21.16■□□□□ 0.98
DDX41-217ENST00000515562 FLT3LGP49771 235 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 IRF5Q13568 498 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 HAUS7Q99871 368 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 BOLA2Q9H3K6 86 aa21.16■□□□□ 0.98
DDX41-217ENST00000515562 BIN2Q9UBW5 565 aaPredicted RBP21.16■□□□□ 0.98
DDX41-217ENST00000515562 MTFR1Q15390 333 aa21.15■□□□□ 0.98
DDX41-217ENST00000515562 CERKLQ49MI3 558 aaPredicted RBP21.15■□□□□ 0.98
DDX41-217ENST00000515562 NKX2-3Q8TAU0 364 aa21.15■□□□□ 0.98
DDX41-217ENST00000515562 PXYLP1Q8TE99 480 aa21.15■□□□□ 0.98
DDX41-217ENST00000515562 EDC3Q96F86 508 aaKnown RBP21.15■□□□□ 0.98
DDX41-217ENST00000515562 MYH7P12883 1935 aa21.14■□□□□ 0.98
DDX41-217ENST00000515562 ADCY3O60266 1144 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 POLR3DP05423 398 aaPredicted RBP21.14■□□□□ 0.97
DDX41-217ENST00000515562 ADD2P35612 726 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 USP17L2Q6R6M4 530 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 GTF3C2Q8WUA4 911 aaPredicted RBP21.14■□□□□ 0.97
DDX41-217ENST00000515562 FEZ1Q99689 392 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 MCM9Q9NXL9 1143 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 MORF4L1Q9UBU8 362 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 TAOK2Q9UL54 1235 aa21.14■□□□□ 0.97
DDX41-217ENST00000515562 CCL5P13501 91 aa21.13■□□□□ 0.97
DDX41-217ENST00000515562 PLCD1P51178 756 aa21.13■□□□□ 0.97
DDX41-217ENST00000515562 ABCB5Q2M3G0 1257 aa21.13■□□□□ 0.97
DDX41-217ENST00000515562 LCORLQ8N3X6 602 aa21.13■□□□□ 0.97
DDX41-217ENST00000515562 CABP5Q9NP86 173 aa21.13■□□□□ 0.97
DDX41-217ENST00000515562 GJB1P08034 283 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 SHMT1P34896 483 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 USP14P54578 494 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 HERVK_113P62684 666 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 GABPAQ06546 454 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 RAB3GAP1Q15042 981 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 SDR42E1Q8WUS8 393 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 C12orf42Q96LP6 360 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 RNF208Q9H0X6 261 aa21.12■□□□□ 0.97
DDX41-217ENST00000515562 DCP1AQ9NPI6 582 aaPredicted RBP21.12■□□□□ 0.97
DDX41-217ENST00000515562 ELNP15502 786 aa21.11■□□□□ 0.97
DDX41-217ENST00000515562 GJA8P48165 433 aa21.11■□□□□ 0.97
DDX41-217ENST00000515562 ZSCAN25Q6NSZ9 544 aa21.11■□□□□ 0.97
DDX41-217ENST00000515562 GPATCH3Q96I76 525 aa21.11■□□□□ 0.97
DDX41-217ENST00000515562 EMILIN3Q9NT22 766 aa21.11■□□□□ 0.97
DDX41-217ENST00000515562 SMARCA5O60264 1052 aaPredicted RBP21.1■□□□□ 0.97
DDX41-217ENST00000515562 MBD4O95243 580 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 SLC34A2O95436 690 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 INHAP05111 366 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 UBE3CQ15386 1083 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 SHISA4Q96DD7 197 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 P2RX7Q99572 595 aaKnown RBP21.1■□□□□ 0.97
DDX41-217ENST00000515562 KIAA1683Q9H0B3 1180 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 DCTPP1Q9H773 170 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 ARMT1Q9H993 441 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 ATP8A2Q9NTI2 1148 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 ECHDC1Q9NTX5 307 aa21.1■□□□□ 0.97
DDX41-217ENST00000515562 GPRC5AQ8NFJ5 357 aa21.09■□□□□ 0.97
DDX41-217ENST00000515562 GCC1Q96CN9 775 aa21.09■□□□□ 0.97
DDX41-217ENST00000515562 SWAP70Q9UH65 585 aa21.09■□□□□ 0.97
DDX41-217ENST00000515562 MYH8P13535 1937 aa21.08■□□□□ 0.97
DDX41-217ENST00000515562 ZYXQ15942 572 aaKnown RBP21.08■□□□□ 0.97
DDX41-217ENST00000515562 AMOTL1Q8IY63 956 aa21.08■□□□□ 0.97
DDX41-217ENST00000515562 DOCK3Q8IZD9 2030 aa21.08■□□□□ 0.97
DDX41-217ENST00000515562 DDRGK1Q96HY6 314 aa21.08■□□□□ 0.97
DDX41-217ENST00000515562 UNC93B1Q9H1C4 597 aa21.08■□□□□ 0.97
DDX41-217ENST00000515562 USP17L15C9J2P7 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L13C9JLJ4 530 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 1218.3 ms