RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 ANO2Q9NQ90 1003 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 SEC31BQ9NQW1 1179 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 RTEL1Q9NZ71 1219 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 COL4A1P02462 1669 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 WDR19Q8NEZ3 1342 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 G3V3G9 751 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 PPIP5K2O43314 1243 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 SHOX2O60902 331 aaPredicted RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 FGFR2P21802 821 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 RAD51AP2Q09MP3 1159 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 SCRN1Q12765 414 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 DCAF8Q5TAQ9 597 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 NOL8Q76FK4 1167 aaKnown RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 LARGE2Q8N3Y3 721 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 MAP3K14Q99558 947 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 MRIQ9BWK5 157 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 PDRG1Q9NUG6 133 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 MRFAP1Q9Y605 127 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 MYO1BO43795 1136 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 BMP6P22004 513 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 SARSP49591 514 aaKnown RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 HDLBPQ00341 1268 aaKnown RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 ZSCAN16Q9H4T2 348 aaPredicted RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 RBM8AQ9Y5S9 174 aaKnown RBP8.57□□□□□ -1.04
CLIP1-205ENST00000514271 MROH7-TTC4A0A0A0MT08 1334 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 IRS2Q9Y4H2 1338 aa8.57□□□□□ -1.04
CLIP1-205ENST00000514271 HNRNPH2P55795 449 aaKnown RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 ELF2Q15723 593 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 GPATCH3Q96I76 525 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 C6orf229H3BNL8 230 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 KIF2AO00139 706 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CTAGE5O15320 804 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 SLU7O95391 586 aaKnown RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CCDC158Q5M9N0 1113 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 STRIP1Q5VSL9 837 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 C9orf131Q5VYM1 1079 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CCDC83Q8IWF9 413 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 SLF2Q8IX21 1173 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CNTROBQ8N137 903 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 RNF181Q9P0P0 153 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 DENND2AQ9ULE3 1009 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 HPS5Q9UPZ3 1129 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.56□□□□□ -1.049e-7■■■■□ 23.2
CLIP1-205ENST00000514271 GLTPD2A6NH11 291 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 PTPAQ15257 358 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 SPTY2D1Q68D10 685 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CIAPIN1Q6FI81 312 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 CC2D1AQ6P1N0 951 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 ATG9AQ7Z3C6 839 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 EAF2Q96CJ1 260 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-205ENST00000514271 FAM227BQ96M60 508 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 TIGD1Q96MW7 591 aa8.56□□□□□ -1.04
CLIP1-205ENST00000514271 ATXN2Q99700 1313 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 PRPF6O94906 941 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 GSCP56915 257 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 KRT85P78386 507 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 EMC10Q5UCC4 262 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 FBXO33Q7Z6M2 555 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 WDR66Q8TBY9 1149 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 ANKZF1Q9H8Y5 726 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 SLC24A3Q9HC58 644 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 POLR3EQ9NVU0 708 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 EFCAB8A8MWE9 144 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 BHMG1C9JSJ3 638 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 H3BQF6 201 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 LRRFIP1Q32MZ4 808 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 CCDC24Q8N4L8 307 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 C16orf45Q96MC5 204 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 DNAJC25Q9H1X3 360 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 EFCC1Q9HA90 598 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 ECHDC1Q9NTX5 307 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 TLR7Q9NYK1 1049 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 CLIP2Q9UDT6 1046 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 LCMT1Q9UIC8 334 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 HDAC9Q9UKV0 1011 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 GOLGA6L6A8MZA4 724 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 HIBADHP31937 336 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 AARSP49588 968 aaKnown RBP eCLIP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 NMIQ13287 307 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 STX1AQ16623 288 aa8.55□□□□□ -1.04
CLIP1-205ENST00000514271 CLASRPQ8N2M8 674 aaKnown RBP8.55□□□□□ -1.04
CLIP1-205ENST00000514271 ADAMTSL1Q8N6G6 1762 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 LMOD1P29536 600 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-205ENST00000514271 ZNF165P49910 485 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 FAM160A1Q05DH4 1040 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 ZNF572Q7Z3I7 529 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-205ENST00000514271 PNMA8AQ86V59 439 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-205ENST00000514271 MTMR14Q8NCE2 650 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 NBPF3Q9H094 633 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 POLLQ9UGP5 575 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 USP17L3A6NCW0 530 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 USP17L4A6NCW7 530 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 CCDC69A6NI79 296 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 CLGNO14967 610 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 SURF6O75683 361 aaKnown RBP8.54□□□□□ -1.04
CLIP1-205ENST00000514271 VIL1P09327 827 aaKnown RBP8.54□□□□□ -1.04
CLIP1-205ENST00000514271 ATP5JP18859 108 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 AMPD2Q01433 879 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 FAM173BQ6P4H8 233 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 USP17L1Q7RTZ2 530 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms